Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   KI241_RS23125 Genome accession   NZ_AP021902
Coordinates   5274419..5276008 (+) Length   529 a.a.
NCBI ID   WP_047736281.1    Uniprot ID   A0A423G2T8
Organism   Pseudomonas sp. Cab53     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5269419..5281008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI241_RS23105 (PHLH5_46270) pgeF 5271217..5271942 (-) 726 WP_123579599.1 peptidoglycan editing factor PgeF -
  KI241_RS23110 (PHLH5_46280) rluD 5271939..5272901 (-) 963 WP_042730708.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KI241_RS23115 (PHLH5_46290) - 5273053..5274069 (+) 1017 WP_042730707.1 outer membrane protein assembly factor BamD -
  KI241_RS23120 (PHLH5_46300) - 5274196..5274429 (+) 234 WP_042730706.1 PP0621 family protein -
  KI241_RS23125 (PHLH5_46310) pilS 5274419..5276008 (+) 1590 WP_047736281.1 ATP-binding protein Regulator
  KI241_RS23130 (PHLH5_46320) pilR 5276005..5277351 (+) 1347 WP_212803044.1 sigma-54 dependent transcriptional regulator Regulator
  KI241_RS23135 (PHLH5_46330) thiO 5278000..5279099 (-) 1100 Protein_4581 glycine oxidase ThiO -
  KI241_RS23140 (PHLH5_46340) - 5279157..5279558 (-) 402 WP_042730702.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58536.24 Da        Isoelectric Point: 7.3884

>NTDB_id=75662 KI241_RS23125 WP_047736281.1 5274419..5276008(+) (pilS) [Pseudomonas sp. Cab53]
MNAEAASPRVKQAQRLLRLYHLYRLSIGITLVLLISSNMDNRLLESANDDLLRSGSWLYLVLNILLVVFLENTRRPARLF
GLALADVLLLSWLFFVAGGAPSAIGNLLIVSVAIGNTLLRGRIGLLIAAVATLGIVGSSFFLGLSDASRPSNYLQAGTLG
ALCFAAALLVQGLTRRLEASETLAEQRASEVVGLEALNALILQRMRTGILVLDRQRRVQLANESALNLLGMHDLVGQPID
DCSNALVERLQRWLNNPSLRPQSLTVPGTGLTLQPSFIALGHHEQHQILVFLEDLAQVSQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNSADRRLTQIIQDHSQRMNRVIENVLQLSRRQPPTPQRLDLRTWLQQFVQQAHESATEH
QHLHLSIDPGDYITLMDPDQLTQVLDNLLRNAWRHSAMINEQAEAWLKLSVDPQSQLSTLDIIDNGPGVTPDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=75662 KI241_RS23125 WP_047736281.1 5274419..5276008(+) (pilS) [Pseudomonas sp. Cab53]
GTGAACGCTGAGGCCGCCAGCCCGCGCGTCAAGCAGGCGCAGCGCCTGCTGCGTCTGTATCACCTGTACCGCCTGAGTAT
CGGCATCACCCTAGTGCTGCTGATCTCCAGCAACATGGACAACCGTTTGCTGGAGTCCGCCAACGACGACTTGCTGCGCA
GCGGCAGCTGGTTGTACCTGGTCTTGAACATCCTGCTGGTGGTGTTCCTGGAAAACACCCGCCGCCCGGCCCGCTTGTTC
GGCCTGGCCCTGGCCGACGTGCTGTTGCTCTCCTGGCTGTTTTTCGTCGCCGGGGGCGCCCCCAGCGCCATTGGTAACCT
GCTCATCGTCTCCGTGGCCATCGGCAACACGCTGTTGCGAGGCCGTATCGGCCTGTTGATCGCCGCCGTCGCCACCCTCG
GCATCGTCGGCTCGAGTTTCTTCCTCGGGCTGAGCGACGCAAGCCGGCCCAGCAACTACCTGCAGGCCGGCACCCTGGGC
GCGCTGTGCTTTGCCGCCGCGCTATTGGTCCAAGGCCTGACCCGACGCCTGGAGGCCAGCGAAACCCTGGCCGAGCAACG
GGCCAGTGAAGTGGTCGGCCTGGAGGCGCTCAACGCCCTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTCGACC
GCCAACGCCGGGTGCAACTGGCCAACGAAAGCGCGCTGAACCTGCTGGGCATGCACGACCTGGTCGGCCAGCCGATCGAC
GACTGCTCCAACGCCCTGGTCGAACGCCTGCAACGCTGGCTGAACAACCCCAGCCTGCGGCCACAGAGCCTGACCGTCCC
TGGCACCGGCCTGACGCTGCAGCCGAGCTTCATCGCCCTGGGGCATCACGAACAGCATCAGATCCTGGTGTTTCTCGAAG
ACCTGGCCCAGGTGTCCCAACAGGCCCAACAACTTAAACTCGCCTCCCTCGGGCGCCTCACCGCCGGCATCGCCCATGAA
ATCCGCAACCCCTTGGGCGCGATCAGCCATGCCGCGCAATTGCTGCGCGAGTCCGAGGAACTGAACAGCGCCGATCGGCG
TCTGACGCAGATTATTCAAGACCACTCGCAACGAATGAACCGCGTCATCGAAAACGTCCTGCAGCTGTCACGCCGCCAGC
CACCCACGCCCCAACGCCTCGACCTGCGGACCTGGCTGCAGCAATTCGTCCAGCAAGCCCACGAAAGCGCGACCGAGCAC
CAGCATTTGCACCTGAGCATCGATCCAGGCGACTACATTACCCTCATGGACCCCGACCAGTTGACCCAGGTGCTCGACAA
CCTGCTGCGCAACGCCTGGCGCCACAGCGCGATGATCAACGAGCAGGCCGAAGCCTGGTTGAAGCTGTCCGTCGACCCAC
AGAGCCAGCTATCCACGCTGGACATCATCGACAACGGGCCCGGCGTGACACCCGACCAGCAGGCGCATCTGTTCGAACCC
TTTTTCACCACCAGCAGCCAGGGCACCGGCCTTGGCCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGTTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

PAS domain (PAS_8)

(202-255)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A423G2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

58.902

99.811

0.588

Multiple sequence alignment