Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   OOK60_RS18045 Genome accession   NZ_CP110848
Coordinates   4242350..4242727 (+) Length   125 a.a.
NCBI ID   WP_265901869.1    Uniprot ID   -
Organism   Trichothermofontia sichuanensis B231     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4237350..4247727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOK60_RS18025 (OOK60_18025) - 4237913..4238746 (-) 834 WP_265901865.1 Uma2 family endonuclease -
  OOK60_RS18030 (OOK60_18030) - 4239098..4240024 (-) 927 WP_265901866.1 class I SAM-dependent methyltransferase -
  OOK60_RS18035 (OOK60_18035) chlP 4240450..4241673 (+) 1224 WP_265901867.1 geranylgeranyl reductase -
  OOK60_RS18040 (OOK60_18040) - 4241798..4241989 (+) 192 WP_265901868.1 hypothetical protein -
  OOK60_RS18045 (OOK60_18045) pilH 4242350..4242727 (+) 378 WP_265901869.1 response regulator transcription factor Machinery gene
  OOK60_RS18050 (OOK60_18050) - 4243292..4244020 (-) 729 WP_265901870.1 ATP synthase F0 subunit B -
  OOK60_RS18055 (OOK60_18055) coaD 4243927..4244484 (-) 558 WP_265901871.1 pantetheine-phosphate adenylyltransferase -
  OOK60_RS18060 (OOK60_18060) - 4244693..4245436 (-) 744 WP_265901872.1 cation diffusion facilitator family transporter -
  OOK60_RS18065 (OOK60_18065) - 4245474..4246325 (-) 852 WP_265904239.1 alpha/beta fold hydrolase -
  OOK60_RS18070 (OOK60_18070) - 4246543..4247715 (+) 1173 WP_265901873.1 glycosyltransferase -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14128.23 Da        Isoelectric Point: 6.7110

>NTDB_id=756594 OOK60_RS18045 WP_265901869.1 4242350..4242727(+) (pilH) [Trichothermofontia sichuanensis B231]
MSTVLVVDDSHTAREMVAKLLKQNGLDVIEASDGLEAKEYLATSTPDLVVTDVVMPRMNGYELCRWIKSDPKTQHTPVLM
CTSKNQEFDRYWGTKQGADAYITKPFHPPEMLKTVKQLLRQAQST

Nucleotide


Download         Length: 378 bp        

>NTDB_id=756594 OOK60_RS18045 WP_265901869.1 4242350..4242727(+) (pilH) [Trichothermofontia sichuanensis B231]
ATGAGTACAGTTCTGGTCGTTGATGATAGCCATACCGCACGGGAAATGGTCGCTAAGCTTCTTAAGCAAAATGGGCTGGA
TGTGATTGAGGCCAGTGATGGCCTTGAGGCAAAGGAGTATTTGGCGACGAGTACACCGGATTTGGTGGTGACCGATGTGG
TCATGCCCCGGATGAATGGATATGAACTCTGCCGCTGGATTAAGAGTGATCCCAAAACGCAACATACACCTGTCCTCATG
TGTACCAGCAAAAACCAGGAGTTCGATCGCTACTGGGGAACCAAGCAAGGGGCCGATGCCTACATCACCAAACCCTTCCA
CCCGCCGGAAATGTTAAAAACGGTCAAGCAACTGTTACGCCAGGCCCAAAGTACCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

61.157

96.8

0.592
  pilG Acinetobacter baumannii strain A118

42.105

91.2

0.384
  pilL-C Synechocystis sp. PCC 6803

38.983

94.4

0.368