Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QJP74_RS16920 Genome accession   NZ_CP124429
Coordinates   3462017..3462754 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain AVS0051     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3457017..3467754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJP74_RS16905 (QJP74_16905) clpC 3457471..3460044 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  QJP74_RS16910 (QJP74_16910) yfiH 3460174..3460905 (-) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  QJP74_RS16915 (QJP74_16915) rluD 3460902..3461882 (-) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QJP74_RS16920 (QJP74_16920) comL 3462017..3462754 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  QJP74_RS16925 (QJP74_16925) raiA 3463024..3463365 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  QJP74_RS16930 (QJP74_16930) pheL 3463469..3463516 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  QJP74_RS16935 (QJP74_16935) pheA 3463615..3464775 (+) 1161 WP_000200140.1 bifunctional chorismate mutase/prephenate dehydratase -
  QJP74_RS16940 (QJP74_16940) tyrA 3464818..3465939 (-) 1122 WP_000225212.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  QJP74_RS16945 (QJP74_16945) aroF 3465950..3467020 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  QJP74_RS16950 (QJP74_16950) yfiL 3467230..3467595 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=756501 QJP74_RS16920 WP_000197686.1 3462017..3462754(+) (comL) [Escherichia coli strain AVS0051]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=756501 QJP74_RS16920 WP_000197686.1 3462017..3462754(+) (comL) [Escherichia coli strain AVS0051]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376