Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   BV903_RS05415 Genome accession   NZ_CP110813
Coordinates   1278491..1279909 (-) Length   472 a.a.
NCBI ID   WP_078998155.1    Uniprot ID   -
Organism   Lysobacter enzymogenes strain B25     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1273491..1284909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV903_RS05400 (BV903_005400) - 1274388..1276013 (-) 1626 WP_267272052.1 phosphoethanolamine transferase -
  BV903_RS05405 (BV903_005405) - 1276152..1276592 (-) 441 WP_078998157.1 pilin -
  BV903_RS05410 (BV903_005410) - 1277433..1277888 (-) 456 WP_078998156.1 pilin -
  BV903_RS05415 (BV903_005415) pilR 1278491..1279909 (-) 1419 WP_078998155.1 sigma-54 dependent transcriptional regulator Regulator
  BV903_RS05420 (BV903_005420) - 1280008..1281633 (-) 1626 WP_057948793.1 ATP-binding protein -
  BV903_RS05425 (BV903_005425) sucC 1281990..1283156 (+) 1167 WP_057948792.1 ADP-forming succinate--CoA ligase subunit beta -
  BV903_RS05430 (BV903_005430) sucD 1283323..1284198 (+) 876 WP_057948791.1 succinate--CoA ligase subunit alpha -
  BV903_RS05435 (BV903_005435) - 1284321..1284611 (+) 291 WP_078998154.1 hypothetical protein -
  BV903_RS05440 (BV903_005440) - 1284608..1284904 (+) 297 WP_078998153.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 50903.40 Da        Isoelectric Point: 7.1658

>NTDB_id=756407 BV903_RS05415 WP_078998155.1 1278491..1279909(-) (pilR) [Lysobacter enzymogenes strain B25]
MAETRSALVVDDERDIRELLVMTLGRMGLRCDTASGLNEARSQLLRNRYDLCLTDMRLPDGSGMDLVAEISQKHPNTPVA
MITAFGNVEAAVEALKAGAFDFVAKPVDLSVLRDLVRHALELHETRRSASEAVGSRLYGESPAMIKLRQTIGKVARSQAP
VYIAGESGVGKELVARTIHSEGGRADGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAADGGTLFLDEVAE
LPLAMQVKLLRAIQEKSIRPVGAQAEVTVDVRILSATHKDLAALVAEGRFRQDLYYRINVIELRVPPLRERLDDLPGLAA
KILHRLAGNQGRPVPRLGDDALEALRAYNFPGNVRELENILERALALAEGEVLSAGDLRLPRLATQAAPGAVAPGAAPPA
AGQPVPPGAVDPRTLNPRDTATSALPSYIEEIERAAIQQALQENRYNKTRTAAALGITFRALRYKLKKLGID

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=756407 BV903_RS05415 WP_078998155.1 1278491..1279909(-) (pilR) [Lysobacter enzymogenes strain B25]
ATGGCTGAAACCCGTAGTGCATTGGTAGTCGACGACGAACGCGATATCCGCGAGTTGCTCGTCATGACGTTGGGCCGCAT
GGGCCTGCGTTGCGATACCGCGTCGGGCCTCAACGAGGCCCGCAGCCAGCTGCTGCGCAATCGTTACGATCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCTCGGGCATGGACCTGGTCGCCGAGATCAGCCAGAAGCATCCCAACACCCCGGTGGCG
ATGATCACCGCCTTCGGCAACGTCGAGGCCGCGGTGGAAGCGCTCAAGGCCGGCGCGTTCGACTTCGTCGCCAAGCCGGT
CGACCTGTCGGTGCTGCGCGACCTGGTGCGCCACGCGCTGGAGTTGCACGAGACCCGCCGCAGCGCCAGCGAGGCGGTCG
GCTCGCGCCTGTACGGCGAATCGCCGGCGATGATCAAGCTGCGCCAGACCATCGGCAAGGTCGCGCGCAGCCAGGCGCCG
GTGTACATCGCCGGCGAATCGGGCGTGGGCAAGGAACTGGTCGCGCGCACCATCCACTCCGAGGGCGGCCGCGCCGACGG
CCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCT
TCACCGGCGCCCACGCCGACAAGCCCGGCCTGTTCCAGGCCGCCGACGGCGGCACCTTGTTCCTCGACGAAGTCGCCGAG
CTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGATCCGTCCGGTCGGCGCCCAGGCCGAGGT
CACGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTCGCTGCGCTGGTCGCCGAAGGCCGCTTCCGCCAGGACC
TGTACTACCGCATCAACGTCATCGAATTGCGCGTGCCGCCGCTGCGCGAGCGCCTGGACGATCTGCCCGGCCTGGCCGCG
AAGATCCTCCACCGCCTGGCCGGCAACCAGGGCCGGCCGGTGCCCCGACTGGGCGACGACGCGCTCGAGGCGCTACGCGC
CTACAACTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAACGCGCGCTGGCCCTGGCCGAAGGCGAAGTCCTCA
GCGCCGGCGACCTGCGCCTGCCGCGCCTGGCCACCCAGGCCGCGCCGGGCGCCGTCGCCCCCGGCGCCGCGCCGCCGGCC
GCCGGCCAGCCCGTGCCCCCGGGCGCGGTCGACCCGCGCACGCTCAACCCGCGCGACACCGCCACCAGCGCCCTGCCGTC
CTACATCGAAGAAATCGAGCGCGCCGCGATCCAGCAGGCGCTGCAGGAAAACCGCTACAACAAGACCCGTACCGCGGCCG
CGCTGGGCATTACGTTCCGGGCGCTGCGCTATAAGCTGAAGAAGCTCGGGATCGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(429-469)

Sigma-54 interaction domain (Sigma54_activat)

(138-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.753

99.364

0.633
  pilR Acinetobacter baumannii strain A118

47.908

100

0.485