Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   OPU65_RS20060 Genome accession   NZ_CP110812
Coordinates   3872555..3873193 (+) Length   212 a.a.
NCBI ID   WP_003184849.1    Uniprot ID   D9YRJ9
Organism   Bacillus paralicheniformis strain CamBx3     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3867555..3878193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPU65_RS20035 (OPU65_20035) - 3867917..3868264 (-) 348 WP_265625793.1 hypothetical protein -
  OPU65_RS20040 (OPU65_20040) degQ 3868750..3868890 (+) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  OPU65_RS20045 (OPU65_20045) - 3869079..3869990 (+) 912 WP_265625794.1 polyprenyl synthetase family protein -
  OPU65_RS20050 (OPU65_20050) comX 3869962..3870132 (+) 171 WP_020452790.1 competence pheromone ComX -
  OPU65_RS20055 (OPU65_20055) comP 3870153..3872468 (+) 2316 WP_025809738.1 sensor histidine kinase Regulator
  OPU65_RS20060 (OPU65_20060) comA 3872555..3873193 (+) 639 WP_003184849.1 response regulator transcription factor Regulator
  OPU65_RS20065 (OPU65_20065) - 3873210..3873599 (+) 390 WP_144498842.1 hotdog fold thioesterase -
  OPU65_RS20070 (OPU65_20070) mnhG 3873636..3874010 (-) 375 WP_265625795.1 monovalent cation/H(+) antiporter subunit G -
  OPU65_RS20075 (OPU65_20075) - 3873994..3874278 (-) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  OPU65_RS20080 (OPU65_20080) - 3874278..3874754 (-) 477 WP_265625796.1 Na+/H+ antiporter subunit E -
  OPU65_RS20085 (OPU65_20085) - 3874760..3876238 (-) 1479 WP_265625797.1 Na+/H+ antiporter subunit D -
  OPU65_RS20090 (OPU65_20090) - 3876231..3876572 (-) 342 WP_043929148.1 Na(+)/H(+) antiporter subunit C -
  OPU65_RS20095 (OPU65_20095) - 3876572..3877003 (-) 432 WP_043929147.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24146.54 Da        Isoelectric Point: 4.7105

>NTDB_id=756396 OPU65_RS20060 WP_003184849.1 3872555..3873193(+) (comA) [Bacillus paralicheniformis strain CamBx3]
MRRLLVIDDHPAVMEGTKAILETNQDFVVDCLSPEASEQFLKKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYFKQLITQQKSKSNSQQTQHDLLTERECLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFSKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=756396 OPU65_RS20060 WP_003184849.1 3872555..3873193(+) (comA) [Bacillus paralicheniformis strain CamBx3]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACGAAGGCAATTCTTGAAACGAACCAGGACTT
TGTTGTCGATTGCCTCAGCCCTGAAGCCAGCGAACAATTTCTCAAGAAGCATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTAAATTTGGGTGAAATCAACGGCATGGACCTATCTAAGAAAATCCTTGAGACGTGTTCATCATGCAAAATTATC
GTTTACACAGGCTATGAAGTCGAAGATTATTTTGAAGAGGCGATTCGTTCCGGCATGCACGGCGCCATCAGCAAAACGGA
ATCGAAGGAAAAGATTATAGAGTACATATATCAGGTGCTGGATAATAAAATTGTCGTCGATTATGATTATTTCAAGCAGC
TGATTACACAGCAAAAATCGAAGTCAAACAGCCAGCAGACCCAGCACGATCTTTTGACTGAAAGGGAATGCCTGATCTTA
AAAGAAGTCGAAAAAGGCTATACAAATCAAGAAATTGCTGATGCGCTTCATTTAAGCAAGCGGTCGATCGAATACAGTCT
GACTTCCGTATTCAGCAAACTGAATGTAGGATCACGGACAGAGGCTGTTTTAATCGCGAAATCTGAAGGCGTACTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9YRJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

77.103

100

0.778