Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   OPU65_RS12380 Genome accession   NZ_CP110812
Coordinates   2418095..2418493 (+) Length   132 a.a.
NCBI ID   WP_243943607.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CamBx3     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2413095..2423493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPU65_RS12355 (OPU65_12355) - 2413771..2414511 (+) 741 WP_265624890.1 ribonuclease YeeF family protein -
  OPU65_RS12360 (OPU65_12360) - 2414629..2416332 (+) 1704 WP_265624891.1 methyl-accepting chemotaxis protein -
  OPU65_RS12365 (OPU65_12365) - 2416352..2417155 (-) 804 WP_265624892.1 protein kinase domain-containing protein -
  OPU65_RS12370 (OPU65_12370) - 2417160..2417363 (-) 204 WP_125897646.1 hypothetical protein -
  OPU65_RS12375 (OPU65_12375) nucA/comI 2417631..2418077 (+) 447 WP_243943606.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  OPU65_RS12380 (OPU65_12380) nin/comJ 2418095..2418493 (+) 399 WP_243943607.1 competence protein ComJ Regulator
  OPU65_RS12385 (OPU65_12385) - 2418534..2419970 (-) 1437 WP_243943609.1 glycoside hydrolase family 1 protein -
  OPU65_RS12390 (OPU65_12390) - 2420040..2420765 (-) 726 WP_243943611.1 AAA family ATPase -
  OPU65_RS12395 (OPU65_12395) - 2420862..2421413 (-) 552 WP_265624893.1 NAD(P)H-dependent oxidoreductase -
  OPU65_RS12400 (OPU65_12400) - 2421598..2422473 (+) 876 WP_243943614.1 transporter substrate-binding domain-containing protein -
  OPU65_RS12405 (OPU65_12405) - 2422485..2423168 (+) 684 WP_243943616.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15029.07 Da        Isoelectric Point: 5.1599

>NTDB_id=756371 OPU65_RS12380 WP_243943607.1 2418095..2418493(+) (nin/comJ) [Bacillus paralicheniformis strain CamBx3]
MIKKWEAQEMTMSYHQFTVYQKGGKPPVMDWTDEDIKRGYTTGEHAVSFEALDNTSSLVEVRLNVQEQVPSFNRRVTVSF
DVLHDGVEIASVLSKKLSCDIPQGVYQLTCYTIMPDQNGTAKITYILDFKQA

Nucleotide


Download         Length: 399 bp        

>NTDB_id=756371 OPU65_RS12380 WP_243943607.1 2418095..2418493(+) (nin/comJ) [Bacillus paralicheniformis strain CamBx3]
TTGATCAAAAAGTGGGAAGCACAAGAAATGACGATGTCATACCATCAGTTTACCGTTTATCAAAAAGGCGGAAAGCCGCC
CGTTATGGATTGGACAGACGAGGATATTAAAAGAGGCTACACAACGGGAGAACACGCGGTCTCGTTTGAAGCTCTCGATA
ATACCTCATCTTTAGTAGAAGTCCGTTTGAATGTCCAGGAACAGGTTCCCTCCTTTAACAGGCGCGTCACCGTTTCTTTC
GACGTGCTTCATGACGGGGTCGAAATTGCAAGCGTCCTATCCAAGAAATTGTCATGCGACATCCCGCAAGGCGTCTATCA
GCTGACATGCTATACGATTATGCCTGATCAAAACGGCACTGCAAAGATCACCTATATTCTCGATTTTAAACAGGCCTGA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

50.781

96.97

0.492