Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   OPU65_RS12375 Genome accession   NZ_CP110812
Coordinates   2417631..2418077 (+) Length   148 a.a.
NCBI ID   WP_243943606.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CamBx3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2412631..2423077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPU65_RS12355 (OPU65_12355) - 2413771..2414511 (+) 741 WP_265624890.1 ribonuclease YeeF family protein -
  OPU65_RS12360 (OPU65_12360) - 2414629..2416332 (+) 1704 WP_265624891.1 methyl-accepting chemotaxis protein -
  OPU65_RS12365 (OPU65_12365) - 2416352..2417155 (-) 804 WP_265624892.1 protein kinase domain-containing protein -
  OPU65_RS12370 (OPU65_12370) - 2417160..2417363 (-) 204 WP_125897646.1 hypothetical protein -
  OPU65_RS12375 (OPU65_12375) nucA/comI 2417631..2418077 (+) 447 WP_243943606.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  OPU65_RS12380 (OPU65_12380) nin/comJ 2418095..2418493 (+) 399 WP_243943607.1 competence protein ComJ Regulator
  OPU65_RS12385 (OPU65_12385) - 2418534..2419970 (-) 1437 WP_243943609.1 glycoside hydrolase family 1 protein -
  OPU65_RS12390 (OPU65_12390) - 2420040..2420765 (-) 726 WP_243943611.1 AAA family ATPase -
  OPU65_RS12395 (OPU65_12395) - 2420862..2421413 (-) 552 WP_265624893.1 NAD(P)H-dependent oxidoreductase -
  OPU65_RS12400 (OPU65_12400) - 2421598..2422473 (+) 876 WP_243943614.1 transporter substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16279.33 Da        Isoelectric Point: 6.2390

>NTDB_id=756370 OPU65_RS12375 WP_243943606.1 2417631..2418077(+) (nucA/comI) [Bacillus paralicheniformis strain CamBx3]
MDKIKSLLITLLAVAVVIIGIISGDFFTSEHQPSGRQNGSNYDEVLIFPSDRYPETGAHIRKAIKKGHSKICTIDRDGAD
ERRKESLKDVPSKSGYDRDEWPMAMCEEGGTGASVEYISPSDNRGAGSWVGNQVSDYPDGTKILFKIK

Nucleotide


Download         Length: 447 bp        

>NTDB_id=756370 OPU65_RS12375 WP_243943606.1 2417631..2418077(+) (nucA/comI) [Bacillus paralicheniformis strain CamBx3]
ATGGACAAGATTAAATCTTTGCTGATCACCTTGCTCGCCGTCGCCGTCGTGATCATCGGCATTATATCCGGCGACTTTTT
CACTTCAGAACACCAGCCTTCAGGCCGGCAAAACGGCTCAAACTATGATGAAGTGCTGATTTTTCCGTCGGACCGCTATC
CTGAAACAGGCGCACACATTCGAAAGGCCATCAAAAAAGGGCATTCCAAAATCTGCACGATCGACAGGGACGGAGCCGAC
GAACGCCGAAAGGAATCGTTAAAAGATGTTCCTTCCAAATCTGGCTATGACCGCGACGAGTGGCCGATGGCCATGTGCGA
AGAAGGCGGAACAGGTGCTTCCGTCGAGTATATCAGTCCATCTGATAACCGCGGAGCAGGGTCTTGGGTGGGCAATCAGG
TAAGCGATTATCCGGACGGTACGAAAATACTTTTCAAGATTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

63.946

99.324

0.635