Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   OPU65_RS00955 Genome accession   NZ_CP110812
Coordinates   160270..162000 (+) Length   576 a.a.
NCBI ID   WP_243943194.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CamBx3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 155270..167000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPU65_RS00930 (OPU65_00930) - 155509..155769 (+) 261 WP_043927838.1 exodeoxyribonuclease VII small subunit -
  OPU65_RS00935 (OPU65_00935) - 155759..156649 (+) 891 WP_243943186.1 polyprenyl synthetase family protein -
  OPU65_RS00940 (OPU65_00940) dxs 156882..158783 (+) 1902 WP_265626367.1 1-deoxy-D-xylulose-5-phosphate synthase -
  OPU65_RS00945 (OPU65_00945) - 158780..159625 (+) 846 WP_265626369.1 TlyA family RNA methyltransferase -
  OPU65_RS00950 (OPU65_00950) ahrC 159789..160238 (+) 450 WP_020452129.1 transcriptional regulator AhrC/ArgR -
  OPU65_RS00955 (OPU65_00955) recN 160270..162000 (+) 1731 WP_243943194.1 DNA repair protein RecN Machinery gene
  OPU65_RS00960 (OPU65_00960) spoIVB 162148..163464 (+) 1317 WP_265626371.1 SpoIVB peptidase -
  OPU65_RS00965 (OPU65_00965) spo0A 163754..164554 (+) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  OPU65_RS00970 (OPU65_00970) - 164902..165102 (+) 201 WP_265627931.1 hypothetical protein -
  OPU65_RS00975 (OPU65_00975) - 165035..165193 (+) 159 WP_265626373.1 LCI fold-containing protein -
  OPU65_RS00980 (OPU65_00980) - 165320..165889 (+) 570 WP_265626375.1 serine O-acetyltransferase -
  OPU65_RS00985 (OPU65_00985) - 166408..166728 (+) 321 WP_265626377.1 hypothetical protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64661.55 Da        Isoelectric Point: 4.8745

>NTDB_id=756339 OPU65_RS00955 WP_243943194.1 160270..162000(+) (recN) [Bacillus paralicheniformis strain CamBx3]
MLAELSIKNFAIIEELTVSFEKGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEYVRYGEKRAELEGLFLLDSGHPVFDLC
TELGIEASDDMIVMRRDINANGKSICRVNGKLVTIAALREVGRLLLDIHGQHDNQLLMEDEHHLQLLDRFAGEEIEHALK
AYQEVYSRYMDVMKKVKELSESEQEMAHRLDLIQFQLDEIESANLEPKEDELLQEERRQIANFEKIYEALQNAYNALRNE
QAGLDWVGMASSELENVSGINERLNKVSESVANAYYILEDSTFQIRNMLDELEYDPERLDYIESRLNEIKQLKRKYGATV
EDIQAYSAKIEEEIDRIENRDSHLQALKSRLESIGKDVAIEAANVSEIRKKWAKKLAKQIQQELKDLYMEKSTFDTEFQV
KKAERDDDAPVVNGMPVQLTKHGIDTVHFLISTNTGEPLKSLSKVASGGELSRIMLAMKSIFSAQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHRVSIGSQVLCITHLPQVAAMADTHLLITKQSKDGRTTTSVTPLSKQEKIAEIGRMIAGVEVTDLTKR
HAKELLNQAKLVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=756339 OPU65_RS00955 WP_243943194.1 160270..162000(+) (recN) [Bacillus paralicheniformis strain CamBx3]
TTGTTAGCTGAATTATCGATCAAAAACTTTGCCATTATCGAAGAATTAACCGTTTCTTTTGAAAAAGGGCTGACGGTTCT
GACCGGTGAAACGGGGGCCGGAAAATCGATCATCATCGACGCCGTCTCTTTGCTTGTCGGAGGCCGCGGCTCGTCCGAAT
ATGTCAGATATGGCGAGAAAAGAGCCGAATTGGAAGGGCTATTCCTCCTTGACAGCGGCCATCCGGTTTTTGATTTGTGC
ACAGAACTGGGGATTGAAGCCTCGGATGACATGATCGTCATGAGGAGAGATATTAACGCAAACGGCAAGAGCATCTGCCG
CGTCAATGGAAAACTTGTCACCATTGCCGCTTTGCGGGAAGTCGGCAGACTGCTGCTTGACATTCACGGGCAGCACGACA
ATCAGCTGCTGATGGAGGACGAGCACCATCTTCAGCTTCTGGACAGGTTTGCGGGAGAAGAAATCGAGCATGCTTTAAAA
GCGTATCAGGAAGTTTACAGCCGCTACATGGACGTCATGAAAAAAGTGAAAGAGCTTTCTGAAAGCGAGCAGGAAATGGC
TCACAGACTCGATTTAATACAGTTCCAGCTTGATGAAATCGAATCTGCAAACCTTGAGCCGAAAGAGGACGAGCTTCTTC
AGGAAGAGCGCCGTCAAATCGCAAATTTTGAAAAGATATACGAAGCCCTGCAAAATGCCTATAATGCGCTTCGCAACGAG
CAGGCAGGGCTTGACTGGGTCGGCATGGCTTCAAGCGAGCTTGAAAACGTCTCAGGCATCAATGAAAGGCTCAATAAAGT
ATCTGAATCGGTAGCCAACGCATACTACATTCTCGAAGATTCAACTTTTCAAATCAGAAATATGCTGGATGAACTCGAAT
ACGACCCCGAGCGCCTCGATTATATCGAATCGCGATTAAACGAAATCAAACAGCTGAAACGCAAATACGGCGCTACTGTC
GAAGATATCCAAGCTTATTCGGCTAAGATAGAGGAAGAGATCGACCGGATCGAAAACCGGGACAGCCACTTGCAGGCTTT
AAAATCCCGACTCGAATCAATCGGCAAGGATGTGGCGATTGAAGCCGCCAATGTGTCTGAAATCAGAAAAAAATGGGCAA
AAAAACTGGCCAAACAGATTCAGCAGGAACTGAAAGATCTGTATATGGAAAAATCGACATTCGATACGGAATTCCAGGTG
AAAAAAGCGGAACGGGATGATGATGCACCCGTCGTCAACGGTATGCCGGTTCAGCTCACAAAGCACGGCATTGACACCGT
CCATTTCCTAATCTCAACAAACACGGGAGAACCGCTCAAATCTTTGTCAAAGGTTGCATCTGGAGGAGAGCTGTCAAGAA
TCATGCTGGCGATGAAAAGCATTTTCTCTGCTCAGCAGGATGTCACCTCGATCATTTTCGATGAAGTGGATACGGGTGTA
AGCGGCAGGGTCGCGCAGGCGATCGCCGAAAAAATACACCGCGTCTCGATCGGCTCTCAAGTTTTATGCATTACCCACTT
GCCGCAGGTGGCCGCGATGGCTGACACCCACCTTTTGATTACGAAACAGTCAAAAGACGGAAGAACGACGACAAGCGTCA
CACCGTTGTCAAAACAGGAAAAAATAGCGGAAATCGGCCGGATGATCGCCGGAGTTGAAGTAACGGATCTGACGAAGCGC
CATGCGAAAGAACTTTTGAACCAAGCTAAGCTTGTTAAAACTACCGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

81.771

100

0.818