Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   OQB65_RS03670 Genome accession   NZ_CP110808
Coordinates   830339..831931 (-) Length   530 a.a.
NCBI ID   WP_266001695.1    Uniprot ID   -
Organism   Pseudomonas syringae strain MUP20     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 825339..836931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQB65_RS03655 (OQB65_03655) - 827333..827740 (+) 408 WP_103697194.1 type IV pilin protein -
  OQB65_RS03660 (OQB65_03660) thiO 827766..828869 (+) 1104 WP_103689666.1 glycine oxidase ThiO -
  OQB65_RS03665 (OQB65_03665) pilR 828999..830336 (-) 1338 WP_266001693.1 sigma-54-dependent transcriptional regulator Regulator
  OQB65_RS03670 (OQB65_03670) pilS 830339..831931 (-) 1593 WP_266001695.1 sensor histidine kinase Regulator
  OQB65_RS03675 (OQB65_03675) - 831921..832160 (-) 240 WP_032607804.1 PP0621 family protein -
  OQB65_RS03680 (OQB65_03680) - 832280..833302 (-) 1023 WP_003371138.1 outer membrane protein assembly factor BamD -
  OQB65_RS03685 (OQB65_03685) rluD 833452..834414 (+) 963 WP_054070792.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OQB65_RS03690 (OQB65_03690) pgeF 834411..835139 (+) 729 WP_266001704.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58041.96 Da        Isoelectric Point: 6.8620

>NTDB_id=756278 OQB65_RS03670 WP_266001695.1 830339..831931(-) (pilS) [Pseudomonas syringae strain MUP20]
MTADSPSLVSPQAQRILRLYHLYRLTIGIVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQFF
GLAMTDAIMLSALFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARMQVSEVLAEQRAADVDSLEALNALILQRMRTGILVLDANHQVLLANQGALHLLGQEQLVGQIID
TCSPQLVERLRQWLVNPIMVPRNITTAPVGLVLQPSFATLNRGDQRQTLVFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELSTADRRLGQIIHEQSGRIDRVIENVLQLSRRREAQPELLDLKTWLEHFVAEFRSSAAPN
QSIHVDISPGTLTTRMDSGQLTQIMTNLLQNGLRYSGKNHPSAQVWLKLHNDPRSELPTLEVLDDGPGVSEQHLSKMFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYAPRPTGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=756278 OQB65_RS03670 WP_266001695.1 830339..831931(-) (pilS) [Pseudomonas syringae strain MUP20]
GTGACCGCTGACTCACCGTCCCTTGTCAGCCCGCAGGCACAGCGGATTCTGCGGCTGTACCACCTCTATCGACTGACCAT
CGGCATCGTACTGGTCCTGTTGATTTCCAGCAGCCTGGAAACCGAGCTGCTGCAACTGGCCAACCCGAACCTGTTCCGCT
CGGGCTGCTGGTTGTATCTGGTGTTCAACATTCTGGTCGTCGTGCTGCTGGAACGCCCCAGCCGTCAGGCACAGTTTTTC
GGCCTGGCGATGACCGACGCGATCATGCTCTCCGCGCTGTTCTACGCAGCCGGCGGGCCTTCCAGCGGTATCGGCAATCT
GTTGATTGCCTCGGTGGCGATCAGCAACGTGTTGCTGCGCGGCCGTATCGGCTTGTTGATCGCTGCGGTTTCGGCCATCG
GCATCATCTACCTGACGTTCTACATCAGCTTCGGCACACCCTCGGTTTCCAACGACTACGTGCAGGCTGGCTCGCTGGGC
GCCTTGTGCTTCGCCGCCGCCCTGCTGGTGCAGGCGCTGACAGCGCGCATGCAGGTCAGCGAGGTACTGGCCGAACAGCG
CGCGGCGGATGTCGACAGCCTCGAAGCACTCAACGCACTCATTCTGCAACGCATGCGTACCGGCATTCTGGTGCTGGATG
CCAATCACCAGGTGCTGCTGGCCAATCAGGGTGCCTTGCACCTGCTGGGTCAGGAGCAACTGGTCGGCCAGATCATCGAC
ACCTGCTCGCCGCAACTGGTTGAACGCCTGCGCCAGTGGCTCGTCAATCCAATCATGGTGCCGCGCAACATCACCACCGC
CCCCGTCGGGCTGGTGCTGCAACCGAGCTTTGCCACGCTCAACCGTGGCGATCAGCGTCAGACGCTGGTTTTTCTCGAAG
ACCTGTCGCAGATCGCCCATCAGGCGCAGCAGCTCAAGCTTGCCGCACTGGGACGCCTGACCGCCGGGATTGCCCATGAG
ATACGCAACCCGCTGGGCGCCGTCAGTCATGCGGCTCAACTGCTTAATGAATCGGAAGAACTCAGTACAGCGGATCGACG
CCTGGGGCAGATCATTCATGAGCAGTCGGGACGCATTGACCGGGTCATCGAAAATGTCCTGCAATTGTCGCGCAGACGCG
AAGCGCAACCCGAACTGCTCGATCTGAAAACCTGGCTGGAACACTTTGTCGCTGAATTTCGCAGTTCCGCAGCGCCCAAT
CAGTCGATTCATGTCGACATCAGCCCCGGCACGCTGACAACCCGCATGGATTCTGGACAACTGACGCAAATCATGACCAA
CCTGTTGCAGAACGGCCTGCGCTACAGCGGCAAGAATCATCCGTCAGCGCAGGTCTGGCTGAAACTGCATAATGACCCGA
GAAGCGAGTTGCCTACGCTGGAAGTGCTGGACGACGGGCCGGGGGTCAGCGAGCAACACCTGAGCAAGATGTTCGAACCG
TTTTTCACCACAGAGAGCAAAGGCACCGGCCTTGGTCTATATCTGTCGCGTGAACTGTGCGAAAGCAATCAGGCGCACCT
GGAATATGCGCCCCGCCCCACGGGTGGCAGTTGCCTGCGCATTACCTTCGCCCACCCGTTCAAGACGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

PAS domain (PAS_8)

(202-254)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.64

100

0.608