Detailed information NTG0756277

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: OQB65_RS03665
• Genome accession: NZ_CP110808
• Coordinates: 828999..830336 (-)
• Length: 445 a.a.
• NCBI ID: WP_266001693.1
• Uniprot ID: -
• Organism: Pseudomonas syringae strain MUP20
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 823999..835336

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OQB65_RS03650 (OQB65_03650)	-	824118..827321 (+)	3204	WP_266001690.1	pilus assembly protein	-
OQB65_RS03655 (OQB65_03655)	-	827333..827740 (+)	408	WP_103697194.1	type IV pilin protein	-
OQB65_RS03660 (OQB65_03660)	thiO	827766..828869 (+)	1104	WP_103689666.1	glycine oxidase ThiO	-
OQB65_RS03665 (OQB65_03665)	pilR	828999..830336 (-)	1338	WP_266001693.1	sigma-54-dependent transcriptional regulator	Regulator
OQB65_RS03670 (OQB65_03670)	pilS	830339..831931 (-)	1593	WP_266001695.1	sensor histidine kinase	Regulator
OQB65_RS03675 (OQB65_03675)	-	831921..832160 (-)	240	WP_032607804.1	PP0621 family protein	-
OQB65_RS03680 (OQB65_03680)	-	832280..833302 (-)	1023	WP_003371138.1	outer membrane protein assembly factor BamD	-
OQB65_RS03685 (OQB65_03685)	rluD	833452..834414 (+)	963	WP_054070792.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
OQB65_RS03690 (OQB65_03690)	pgeF	834411..835139 (+)	729	WP_266001704.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49677.66 Da
• Isoelectric Point: 6.2986

>NTDB_id=756277 OQB65_RS03665 WP_266001693.1 828999..830336(-) (pilR) [Pseudomonas syringae strain MUP20]
MTQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNVDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPGAPPTRSIDNRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPPLRERREDIDQLAASV
LKRLAGNGAQPVARLNAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESASPQEGDGPSLADIDNLED
YLESIERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide

• Length: 1338 bp

>NTDB_id=756277 OQB65_RS03665 WP_266001693.1 828999..830336(-) (pilR) [Pseudomonas syringae strain MUP20]
ATGACCCAACGGCAAAAAATCCTGATAGTCGATGATGAGCCGGATATTCGCGAACTCCTGGAGATCACGCTGGGGCGCAT
GAAACTCGACACGCGCAGCGCCCGTAACGTTGCCGAAGCCCACGACTGGCTGGCCCGCGAGCCGTTCGACATGTGCCTGA
CCGACATGCGTCTGCCTGACGGCAATGGCCTTGAGCTGGTGCAACACATACAGCACGGCTACCCCCACGTGCCGGTGGCT
ATGATCACTGCCCACGGCAATGTGGATACCGCGATCAACGCGCTGAAGGCCGGGGCTTTCGATTTTGTGACCAAGCCGGT
CGACCTCGGCAGGTTGCGCGAGCTGGTCAATAGCGCGCTGAGCCTGCCCGGCGCACCACCCACGCGAAGCATCGACAATC
GCCTGCTGGGCGACTCGCTGGCAATGCGTACCTTGCGCAATCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGCGAGTCGGGCAGCGGCAAGGAGCTTGTAGCGCGTCTGATCCACGAGCAGGGCCCACGCATCGACAAGCCTTT
CATACCGGTGAACTGCGGCGCCATTCCTTCCGAGCTGATGGAGAGCGAATTTTTCGGTCATCGCAAAGGCAGCTTCAGCG
GTGCCCACGAAGACAAGCCCGGTCTGTTTCAGGCGGCGCACACCGGCACGCTGTTTCTCGATGAGGTCGCCGACCTGCCG
CTGGCCATGCAGGTCAAACTGCTGCGCGCCATCCAGGAAAAATCCATTCGCAGCGTCGGCGGCCAGCAAGAGCAGATCGT
CGATGTGCGCATTCTGTGCGCCACCCACAAGAATCTGAATGCGGAGGTCGCGGCCGGTCGGTTCCGTCAGGATCTGTATT
ACCGATTGAACGTGATCGAAGTGCGCGTGCCCCCGTTGCGCGAGCGGCGTGAGGATATCGACCAACTGGCAGCCAGCGTG
CTCAAGCGCCTTGCCGGGAACGGCGCACAACCCGTCGCGCGCCTGAACGCGCAGGCGCTGGAAACGCTGAAGAGCTACCG
CTTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCTTACACGCTGTGCGAGAACGACGAAATCCACGCCA
GCGACCTGCGCCTGACCGAGTCCGCCAGCCCTCAGGAGGGCGATGGCCCGAGCCTGGCCGACATCGACAACCTTGAAGAC
TACCTGGAAAGCATCGAACGCCAGCTCATCCTGCAGGCACTGGAAGAAACCCGCTGGAACCGCACTGCGGCGGCAGAAAG
GCTCAGTTTGTCGTTCAGGTCACTGCGCTATCGCCTGAAGAAGCTGGGCTTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	77.652	99.551	0.773
pilR	Acinetobacter baumannii strain A118	49.036	100	0.515
luxO	Vibrio cholerae strain A1552	37.838	99.775	0.378