Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OPZ46_RS18380 Genome accession   NZ_CP110782
Coordinates   3986442..3987077 (-) Length   211 a.a.
NCBI ID   WP_003247132.1    Uniprot ID   A0AAD2WBR1
Organism   Pseudomonas putida DOT-T1E     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3981442..3992077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPZ46_RS18350 (OPZ46_18350) murB 3982539..3983558 (-) 1020 WP_014859649.1 UDP-N-acetylmuramate dehydrogenase -
  OPZ46_RS18355 (OPZ46_18355) - 3983555..3984019 (-) 465 WP_004575950.1 low molecular weight protein-tyrosine-phosphatase -
  OPZ46_RS18360 (OPZ46_18360) kdsB 3984019..3984783 (-) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OPZ46_RS18365 (OPZ46_18365) - 3984780..3984965 (-) 186 WP_003247142.1 Trm112 family protein -
  OPZ46_RS18370 (OPZ46_18370) lpxK 3985010..3986011 (-) 1002 WP_014859650.1 tetraacyldisaccharide 4'-kinase -
  OPZ46_RS18375 (OPZ46_18375) - 3986011..3986445 (-) 435 WP_014859651.1 ExbD/TolR family protein -
  OPZ46_RS18380 (OPZ46_18380) exbB 3986442..3987077 (-) 636 WP_003247132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OPZ46_RS18385 (OPZ46_18385) comA 3987233..3989449 (-) 2217 WP_265536523.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OPZ46_RS18390 (OPZ46_18390) - 3989592..3990098 (+) 507 Protein_3633 DUF2062 domain-containing protein -
  OPZ46_RS18395 (OPZ46_18395) - 3990108..3990887 (-) 780 WP_003247128.1 ABC transporter permease -
  OPZ46_RS18400 (OPZ46_18400) - 3990884..3991816 (-) 933 WP_003247127.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22873.20 Da        Isoelectric Point: 7.3616

>NTDB_id=756062 OPZ46_RS18380 WP_003247132.1 3986442..3987077(-) (exbB) [Pseudomonas putida DOT-T1E]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=756062 OPZ46_RS18380 WP_003247132.1 3986442..3987077(-) (exbB) [Pseudomonas putida DOT-T1E]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGTTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGTGCCAGCCGCGTCACCCCGCCCCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCGCTGCGGGCCGATTCGCCACTGGGCGAAATCCTGGCAGCGGGCCTCGCCAAC
TCGCGCCATGGTCGTGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCGCCTCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCAGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825