Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   OPZ46_RS18385 Genome accession   NZ_CP110782
Coordinates   3987233..3989449 (-) Length   738 a.a.
NCBI ID   WP_265536523.1    Uniprot ID   -
Organism   Pseudomonas putida DOT-T1E     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3982233..3994449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPZ46_RS18350 (OPZ46_18350) murB 3982539..3983558 (-) 1020 WP_014859649.1 UDP-N-acetylmuramate dehydrogenase -
  OPZ46_RS18355 (OPZ46_18355) - 3983555..3984019 (-) 465 WP_004575950.1 low molecular weight protein-tyrosine-phosphatase -
  OPZ46_RS18360 (OPZ46_18360) kdsB 3984019..3984783 (-) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OPZ46_RS18365 (OPZ46_18365) - 3984780..3984965 (-) 186 WP_003247142.1 Trm112 family protein -
  OPZ46_RS18370 (OPZ46_18370) lpxK 3985010..3986011 (-) 1002 WP_014859650.1 tetraacyldisaccharide 4'-kinase -
  OPZ46_RS18375 (OPZ46_18375) - 3986011..3986445 (-) 435 WP_014859651.1 ExbD/TolR family protein -
  OPZ46_RS18380 (OPZ46_18380) exbB 3986442..3987077 (-) 636 WP_003247132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OPZ46_RS18385 (OPZ46_18385) comA 3987233..3989449 (-) 2217 WP_265536523.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OPZ46_RS18390 (OPZ46_18390) - 3989592..3990098 (+) 507 Protein_3633 DUF2062 domain-containing protein -
  OPZ46_RS18395 (OPZ46_18395) - 3990108..3990887 (-) 780 WP_003247128.1 ABC transporter permease -
  OPZ46_RS18400 (OPZ46_18400) - 3990884..3991816 (-) 933 WP_003247127.1 ABC transporter ATP-binding protein -
  OPZ46_RS18405 (OPZ46_18405) - 3991950..3992573 (-) 624 WP_003247126.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79700.64 Da        Isoelectric Point: 10.4274

>NTDB_id=756063 OPZ46_RS18385 WP_265536523.1 3987233..3989449(-) (comA) [Pseudomonas putida DOT-T1E]
MRTGMFALALGLLCLGFLPALPSVGWLITLAACAVGSLFTRVWPLGWFLLGLCWACGSAQQALDDRLAAGLEGRTLWLEG
RVAGLPARTAQGVRFELEAPRSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVAGGWRDALRQRLLMVEANGRQAALVALVLGDGAGMAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRHLGAFFPLLLALVAVLVFEPL
AALLPGFWLSFAAVATLIYCFSARLGGWRPWQAWTRAQWVIAVGLLPVLLATGLPVSLSAPLTNLVAVPWVSLAVLPLAL
LGTLMLPLAGVGEALLWLAGGLLDVLFRGLALVAQQRPAWVPPALSWWAWLLVCLGALLLLLPRGVPLRGLGGVMLLALW
VPREPVPFGQIEVWQLDVGQGLAVLLRTRHHSLLYDAGPARGESDLGERVVLPTLRKLGVGGLDVMVISHAHADHAGGAE
AIARGLPIKRIIGGEALVDVPLQPCASGEQWDWDGVRFSLWRWVDGQSSNDRSCVLLVEAQGERLLLAGDMEVAAERAWL
ADTEVPRIDWLQAPHHGSRSSSTEAFVRATAPRGVLISRGRNNSFGHPHVQVVERYKRHGVVMHDTAVEGALRLVLGRHG
EVEGVRRQRRFWRDVGGG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=756063 OPZ46_RS18385 WP_265536523.1 3987233..3989449(-) (comA) [Pseudomonas putida DOT-T1E]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTGCCCGCATTGCCATCGGTCGGATGGTT
GATAACCCTGGCAGCCTGCGCTGTCGGCAGCCTGTTTACCCGCGTATGGCCGTTGGGATGGTTTCTGCTGGGCTTGTGTT
GGGCGTGCGGGTCTGCTCAGCAGGCCCTTGATGATCGTCTGGCTGCCGGCCTGGAGGGGCGCACCTTGTGGCTGGAGGGG
CGGGTGGCGGGTTTGCCGGCCCGCACTGCACAAGGCGTGCGTTTCGAGCTGGAAGCGCCACGCTCGCGGCGGGCCGAACT
GCCTCAGCGTTTGCAACTGAGCTGGTTCGATGGGCCGCCGCTGCGGGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AACGCCCGGCCGGGCTGCTGAACCCGCACGGGCCTGACCGGGAAGCGCAGTTGCTGGCGCGACGGGTGGGGGCTACGGGT
ACGGTCAAGGCGGGGCAGTTGCTGGCGCCAGTCGCCGGTGGTTGGCGCGATGCGCTGCGTCAGCGTTTGCTGATGGTCGA
AGCCAATGGCCGGCAGGCAGCGCTGGTGGCACTGGTGCTTGGCGATGGTGCGGGCATGGCCCGGGAGGACTGGCAGACGT
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATTTCCGGCCAGCACATCGGCCTGGTCGCCGGTTTGCTCTATGGCCTG
GTCGCCGGGCTGGCGCGTTGGGGGCTATGGCCGGCAAGGCTACCGTGGTTACCCTGGGCCTGTGGCCTGGCCATGGCCGC
AGCGCTGGCCTACGGGTGGCTGGCGGGTGGTGGGGTGCCAGTGCAGCGGGCCTGTCTGATGCTGGCCGTGGTGCTGCTCT
GGCGTCTGCGCTTTCGCCACCTTGGCGCTTTTTTTCCGTTGCTGCTTGCACTGGTCGCTGTGCTTGTCTTCGAGCCACTG
GCGGCGTTGCTGCCTGGGTTCTGGCTGTCGTTCGCCGCCGTGGCCACGCTCATCTACTGCTTCAGTGCCCGGTTGGGGGG
TTGGCGGCCCTGGCAGGCCTGGACACGAGCGCAATGGGTGATCGCCGTCGGCTTGCTGCCGGTGTTGCTGGCCACCGGCT
TGCCGGTGAGCCTCAGTGCGCCGCTGACCAACCTTGTGGCGGTGCCGTGGGTCAGCCTGGCGGTCTTGCCATTGGCGTTG
TTGGGCACGCTGATGTTGCCGCTGGCGGGCGTTGGCGAGGCGTTGCTCTGGCTGGCAGGTGGCCTGCTGGATGTGCTGTT
CCGCGGGCTGGCGCTGGTGGCGCAACAGCGCCCGGCATGGGTGCCGCCGGCCCTGTCGTGGTGGGCCTGGCTGCTGGTAT
GTCTGGGTGCGCTGTTGCTTTTGCTGCCTCGTGGTGTGCCGCTGCGCGGGTTGGGAGGGGTGATGCTGCTGGCGCTGTGG
GTACCCAGGGAGCCGGTGCCGTTTGGCCAAATCGAGGTCTGGCAGCTGGATGTCGGCCAGGGGCTGGCGGTGCTCTTGCG
TACGCGGCATCACAGCCTGCTTTACGATGCCGGGCCGGCCAGGGGGGAAAGCGACTTGGGGGAACGCGTGGTGCTGCCAA
CCTTGCGCAAGCTGGGGGTGGGCGGCCTTGACGTGATGGTGATCAGCCATGCGCATGCCGATCATGCGGGCGGGGCCGAG
GCCATTGCCCGTGGTTTGCCGATCAAGCGAATAATCGGTGGGGAAGCGCTGGTTGATGTTCCGTTGCAGCCTTGTGCCAG
TGGCGAGCAATGGGACTGGGATGGCGTGCGTTTTTCGTTGTGGCGCTGGGTGGACGGGCAGAGCAGTAATGACCGTTCCT
GTGTGCTGTTGGTCGAGGCGCAGGGCGAGCGCTTGCTGCTGGCGGGGGATATGGAAGTTGCTGCCGAACGGGCCTGGCTG
GCGGACACTGAAGTGCCGCGTATCGACTGGCTGCAGGCGCCGCATCATGGCAGTCGCAGCTCGTCCACCGAGGCGTTCGT
CCGGGCTACCGCACCGCGCGGGGTATTGATTTCGCGGGGGCGCAACAACAGCTTCGGGCACCCCCACGTGCAGGTGGTCG
AGCGGTATAAGCGGCATGGGGTGGTGATGCATGATACGGCAGTGGAGGGGGCATTGCGGTTGGTGCTGGGGCGGCATGGG
GAGGTTGAGGGTGTGCGCCGACAGCGGCGATTCTGGCGTGATGTGGGGGGTGGCTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(12-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.114

97.696

0.568
  comA Ralstonia pseudosolanacearum GMI1000

35.547

100

0.37