Detailed information NTG0075606

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: KI235_RS25960
• Genome accession: NZ_AP021900
• Coordinates: 5861839..5863185 (+)
• Length: 448 a.a.
• NCBI ID: WP_212795359.1
• Uniprot ID: A0AAD1GV36
• Organism: Pseudomonas sp. St386
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5856839..5868185

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KI235_RS25935 (PHLH3_51650)	pgeF	5857053..5857778 (-)	726	WP_003205694.1	peptidoglycan editing factor PgeF	-
KI235_RS25940 (PHLH3_51660)	rluD	5857775..5858737 (-)	963	WP_003205696.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
KI235_RS25945 (PHLH3_51670)	-	5858888..5859904 (+)	1017	WP_003205698.1	outer membrane protein assembly factor BamD	-
KI235_RS25950 (PHLH3_51680)	-	5860030..5860263 (+)	234	WP_013694237.1	PP0621 family protein	-
KI235_RS25955 (PHLH3_51690)	pilS	5860253..5861842 (+)	1590	WP_003205701.1	ATP-binding protein	Regulator
KI235_RS25960 (PHLH3_51700)	pilR	5861839..5863185 (+)	1347	WP_212795359.1	sigma-54 dependent transcriptional regulator	Regulator
KI235_RS25965 (PHLH3_51710)	-	5863277..5863642 (-)	366	WP_003205705.1	DUF6124 family protein	-
KI235_RS25970 (PHLH3_51720)	thiO	5864878..5865978 (-)	1101	WP_003205709.1	glycine oxidase ThiO	-
KI235_RS25975 (PHLH3_51730)	-	5866034..5866435 (-)	402	WP_003205711.1	type IV pilin protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50132.58 Da
• Isoelectric Point: 6.4100

>NTDB_id=75606 KI235_RS25960 WP_212795359.1 5861839..5863185(+) (pilR) [Pseudomonas sp. St386]
MNNRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQALLAGEAFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPVATPGTTLERSLLGNSPPMLSVRKQIGKLARSQA
PVYISGESGCGKELVARLIHEQGPRANQRFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLNVIELRVPPLRERREDIELLA
NHMLQRLAANTGSPPVRLHPQALDALKNYRFPGNVRELENMLERAYTLCEQQQIEADDLRLAEGNSTTEAGNPYLMQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=75606 KI235_RS25960 WP_212795359.1 5861839..5863185(+) (pilR) [Pseudomonas sp. St386]
TTGAATAATCGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTGCCGAGGCCCAAGCCCTGCTGGCGGGGGAAGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAGCACATCCAGCAACGCTACCCCCAACTGCCC
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTGGGTCGGCTGCGAGAGCTGGTCACCAGTGCCCTGCGCCTGCCGCCGGTCGCCACGCCGGGCACGACCC
TCGAGCGCAGCCTGCTGGGCAACTCGCCACCGATGCTCAGCGTGCGCAAGCAGATCGGGAAACTCGCCCGCAGCCAGGCA
CCGGTGTACATCAGCGGGGAATCGGGCTGCGGCAAGGAACTGGTCGCCCGGCTGATCCACGAACAGGGCCCTCGTGCCAA
CCAGCGCTTCGTACCGGTCAACTGTGGGGCGATTCCCACGGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAGGACAAGCCCGGGCTGTTCCAGGCCGCCCATGGCGGGACCCTGTTCCTCGATGAAGTGGCC
GACTTGCCCTTGGCGATGCAGGTCAAGCTGTTGCGAGCCATCCAGGAAAAAGCCGTGCGCGCCGTTGGCGGCCAACAGGA
AGAAGTGGTGGATGTGCGCATCCTCTGCGCCACCCACAAGGATCTGGACGGCGAAGTGGCTGCCGGGCGCTTTCGCCAGG
ATTTGTATTACCGGCTGAACGTCATCGAACTGCGCGTGCCGCCGTTGCGTGAACGTCGTGAAGACATCGAGCTGCTGGCT
AACCACATGCTCCAGCGCCTGGCGGCCAACACCGGCAGTCCACCGGTCAGATTGCATCCCCAAGCGTTGGACGCTCTCAA
GAATTACCGCTTCCCGGGCAATGTGCGAGAGCTGGAGAACATGCTCGAACGTGCCTACACCCTTTGTGAACAGCAGCAGA
TCGAAGCGGATGACCTGCGCCTGGCCGAGGGCAATAGTACTACTGAGGCAGGCAATCCCTATTTGATGCAGGTCGACAAC
CTGGAGGATTACCTGGAAGACGTTGAGCGCAAGCTCATCCTCCAGGCGTTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGCTTGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Response regulator receiver domain (Response_reg) (9-118)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.054	99.107	0.783
pilR	Acinetobacter baumannii strain A118	50.327	100	0.516