Detailed information NTG0075604

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KI235_RS25850
• Genome accession: NZ_AP021900
• Coordinates: 5844308..5845177 (+)
• Length: 289 a.a.
• NCBI ID: WP_003205672.1
• Uniprot ID: A0AAD1GUZ5
• Organism: Pseudomonas sp. St386
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5839308..5850177

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KI235_RS25825 (PHLH3_51470)	-	5839485..5839781 (+)	297	WP_003205663.1	DUF2845 domain-containing protein	-
KI235_RS25830 (PHLH3_51480)	-	5840110..5840463 (-)	354	WP_003205664.1	BON domain-containing protein	-
KI235_RS25835 (PHLH3_51490)	pilA	5840736..5841161 (-)	426	WP_013694230.1	pilin	Machinery gene
KI235_RS25840 (PHLH3_51500)	pilB	5841386..5843086 (+)	1701	WP_013694231.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KI235_RS25845 (PHLH3_51510)	pilC	5843089..5844306 (+)	1218	WP_003205670.1	type II secretion system F family protein	Machinery gene
KI235_RS25850 (PHLH3_51520)	pilD	5844308..5845177 (+)	870	WP_003205672.1	A24 family peptidase	Machinery gene
KI235_RS25855 (PHLH3_51530)	coaE	5845177..5845800 (+)	624	WP_003205673.1	dephospho-CoA kinase	-
KI235_RS25860 (PHLH3_51540)	yacG	5845797..5846003 (+)	207	WP_003205675.1	DNA gyrase inhibitor YacG	-
KI235_RS25865 (PHLH3_51550)	-	5846000..5846215 (-)	216	WP_013694234.1	hypothetical protein	-
KI235_RS25870 (PHLH3_51560)	-	5846279..5846965 (-)	687	WP_003205678.1	energy-coupling factor ABC transporter permease	-
KI235_RS25875 (PHLH3_51570)	-	5847007..5847417 (-)	411	WP_003205679.1	tautomerase family protein	-
KI235_RS25880 (PHLH3_51580)	-	5847569..5848462 (+)	894	WP_003205681.1	LysR substrate-binding domain-containing protein	-
KI235_RS25885 (PHLH3_51590)	-	5849010..5849636 (+)	627	WP_003205682.1	DUF1780 domain-containing protein	-
KI235_RS25890 (PHLH3_51600)	-	5849633..5850160 (+)	528	WP_003205684.1	MOSC domain-containing protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31941.12 Da
• Isoelectric Point: 8.0578

>NTDB_id=75604 KI235_RS25850 WP_003205672.1 5844308..5845177(+) (pilD) [Pseudomonas sp. St386]
MPLSEFFVLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLNREWRLQAHDLLGLPAETPGPVYNLMLPHSQCPHCGHRIR
PWENIPLLSYLILRGRCSSCAAPIGRRYPLTELACGALSAFVAWHFGFGWHAAMVMVLTWGLLAMSLIDAEHQLLPDTLV
LPLLWLGLIINSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGAIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF

Nucleotide

• Length: 870 bp

>NTDB_id=75604 KI235_RS25850 WP_003205672.1 5844308..5845177(+) (pilD) [Pseudomonas sp. St386]
ATGCCCCTGAGCGAATTCTTCGTGCTGTATCCCCTGGCTTTCGTGCTCGTTGCAGCATTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCAACCGCGAATGGCGCCTGCAGGCCCACGACCTGCTGGGCC
TGCCGGCCGAAACCCCGGGCCCGGTCTACAACCTGATGCTGCCCCACTCCCAGTGCCCGCACTGCGGCCATCGCATCCGC
CCCTGGGAAAACATTCCGCTGCTCAGCTACCTGATACTGCGCGGCCGCTGTTCGAGCTGCGCCGCGCCCATCGGCAGGCG
TTACCCCCTGACCGAATTGGCCTGCGGCGCGTTATCGGCGTTCGTCGCCTGGCATTTCGGTTTTGGCTGGCACGCCGCGA
TGGTGATGGTGTTGACCTGGGGCCTGCTGGCCATGAGCCTGATCGACGCCGAGCATCAATTGCTGCCCGATACCCTGGTG
CTGCCGCTGTTGTGGCTGGGCTTGATCATCAACAGCTTCGGGCTCTTCGTGTCCTTGAACCAGGCGATGTGGGGCGCGGT
GGCCGGCTACCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTATGGGGATT
TCAAGCTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGCTGCTGCTGTCGTCGTTGGTCGGC
GCCGTTATTGGGGCGATTGTGCTGCGCTTGCGTGATGCCCCGGGGTCGACGCAGATCCCCTTTGGACCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.817	98.27	0.519
pilD	Vibrio campbellii strain DS40M4	51.228	98.616	0.505
pilD	Acinetobacter baumannii D1279779	48.754	97.232	0.474
pilD	Acinetobacter nosocomialis M2	48.754	97.232	0.474
pilD	Neisseria gonorrhoeae MS11	47.038	99.308	0.467