Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   BBP27_RS06655 Genome accession   NZ_CP110721
Coordinates   1391395..1394694 (-) Length   1099 a.a.
NCBI ID   WP_188211523.1    Uniprot ID   -
Organism   Neisseria sp. RH3002v2g     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1386395..1399694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP27_RS06630 ilvE 1387435..1388433 (-) 999 WP_036493516.1 branched-chain-amino-acid transaminase -
  BBP27_RS06635 - 1388647..1388970 (+) 324 WP_036490154.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  BBP27_RS06640 lapB 1388996..1390165 (+) 1170 WP_003684462.1 lipopolysaccharide assembly protein LapB -
  BBP27_RS06645 - 1390353..1390808 (+) 456 WP_004521061.1 GNAT family N-acetyltransferase -
  BBP27_RS06650 - 1390885..1391391 (-) 507 WP_188211522.1 thioredoxin family protein -
  BBP27_RS06655 recC 1391395..1394694 (-) 3300 WP_188211523.1 exodeoxyribonuclease V subunit gamma Machinery gene
  BBP27_RS06665 - 1395025..1395906 (-) 882 WP_003745542.1 lysophospholipid acyltransferase family protein -
  BBP27_RS06670 metK 1396299..1397468 (+) 1170 WP_188211524.1 methionine adenosyltransferase -
  BBP27_RS06675 - 1397578..1397898 (+) 321 WP_070849164.1 accessory factor UbiK family protein -
  BBP27_RS06680 comM 1397912..1399408 (+) 1497 WP_188211525.1 YifB family Mg chelatase-like AAA ATPase Machinery gene

Sequence

Protein


Download         Length: 1099 a.a.        Molecular weight: 124914.55 Da        Isoelectric Point: 4.6608

>NTDB_id=756003 BBP27_RS06655 WP_188211523.1 1391395..1394694(-) (recC) [Neisseria sp. RH3002v2g]
MFYLYQSDRLEALAEMCAHIHQALPLDAVLAPEEVVVQSQGMRRYLNVFFARKLGVAANLKFSLPAGLAWQLMRKLVPDV
PPLSPFSPEVMRWRLLNLFRSEAFQTAPEYENVRLKLESYLHSSASADYQLAGQMADIFDQYLVYRPDWIDAWQAGKLLG
LGDDEDWQARLWRYLDDGSQSAPHRVALWEKLLAQLDKSVLPQRLFVFGISTMAPMYLQLLHQISKHCDVFVFALNPSSQ
YWGEVIDEAQILKRGDEADLSQAGHPLLASLGKQGRDFFDFLSEVETEQDIQVYEEGKDDTLLHCLQNDIQNLIMPSERL
YQQEEGEAGAQQAWVQVHDADGNPVCVEPDKLLNDGSVKIVAAHSPLRELQILKEELSLVLQNNPDWQPHDIAVLTPNIE
PYSPFIEAVFGQEQAGSQALPYSISDVKLSRRQPLLYALAQTLDLLESRFEVDKVLPLLESRLVLQRFGLSEEDVPLLHE
AVAGLNVHWGLDQTMREGKDNLFTWQQAVERLALGWMLPEGGNGMWQGVSAWHSNVNQLDVFSGFAEFIRTLADMAAQWQ
EPADVEGWVQRCHDLLEKLFAPDTDDQYAKQQFEQSLAKWQEEAQLAEFDGLLPCKTVIRHIRRFLDSESQAGFLSGGIT
FCSMVPMRSLPFKMVCLLGLNDGDFPRNTKAAVFDLIAKHPKKGDRARRDDDRYLFLEALISAREMLYLSYIGRDIRNDA
EFAPSSLISELLDTIAAMTGKSGRELAEKWVKHHPLQAFSRRYFQKDALSDGLFSTRQDYADALNQPPTQPQPFFLEALS
QEEPGKTIQQGELISFWRNPVKVWLKRNLSWDQPYLDGAWESAEPFEPQHEGRIADAYLDARRKGEDFEDTAIRLNAESL
MPVGELGGLWQKQYQISAKNVDAELIRSNKRPSEPYELHFDDLVLQGTIGNLYECGRIVFQNQKDNAPNRIARLLEHLIF
CAVAPQTVANRQTYIVSLGQTETYAAIGQEAARELLKEWLVYFRIGQNTPLPFFAKTSLAAAEEYGKKEDWDAALRKAYE
VFNGNKMNKAQKEYTEVKLVFGHSNEAPLEEPLFENLVVNLLVPLLNSAAGKNNATEQE

Nucleotide


Download         Length: 3300 bp        

>NTDB_id=756003 BBP27_RS06655 WP_188211523.1 1391395..1394694(-) (recC) [Neisseria sp. RH3002v2g]
ATGTTTTATCTTTATCAGTCCGACCGTTTGGAAGCGCTTGCCGAAATGTGCGCGCATATTCATCAGGCCTTGCCTTTGGA
TGCGGTATTGGCGCCGGAAGAAGTGGTGGTGCAGAGCCAGGGTATGCGGCGGTATCTGAATGTGTTTTTTGCGCGCAAAC
TCGGCGTGGCGGCGAATTTGAAGTTCAGCCTGCCGGCCGGTTTGGCGTGGCAGCTGATGCGTAAATTGGTTCCCGATGTG
CCGCCGCTCAGCCCGTTTTCGCCTGAGGTCATGCGTTGGCGTTTGCTGAATTTGTTCCGCAGCGAAGCGTTTCAGACGGC
TCCGGAATACGAAAACGTGCGCCTGAAGCTGGAAAGTTATTTGCACAGCTCGGCATCGGCGGATTATCAGCTTGCTGGAC
AAATGGCGGATATTTTCGACCAATATTTGGTGTACCGGCCGGATTGGATTGATGCGTGGCAGGCTGGGAAGCTGCTGGGC
TTGGGCGATGATGAGGATTGGCAGGCGCGGTTGTGGCGTTATTTGGACGATGGCAGCCAATCGGCGCCGCACCGCGTGGC
CTTGTGGGAAAAGTTGTTGGCGCAGTTGGATAAATCGGTCTTGCCGCAAAGGTTGTTTGTATTCGGCATTTCGACAATGG
CGCCGATGTATCTGCAACTGCTGCACCAAATTTCCAAGCATTGCGATGTGTTTGTGTTTGCGCTCAATCCGAGCAGCCAA
TATTGGGGCGAGGTCATTGACGAGGCGCAGATTTTGAAAAGGGGCGATGAGGCGGATTTGTCGCAGGCAGGACATCCGCT
GTTGGCTTCTTTGGGCAAGCAGGGACGCGATTTCTTTGATTTTTTGTCGGAAGTGGAAACCGAGCAGGATATTCAGGTTT
ATGAAGAGGGAAAAGACGATACCTTGTTGCATTGCCTGCAAAACGATATCCAAAACTTAATTATGCCGTCTGAACGCTTA
TACCAACAGGAAGAAGGCGAGGCAGGCGCGCAGCAGGCTTGGGTTCAAGTCCACGATGCGGACGGCAATCCGGTGTGTGT
CGAGCCGGACAAGCTGTTGAACGACGGCTCGGTCAAAATCGTCGCGGCCCACAGCCCTTTGCGCGAACTGCAGATTTTGA
AAGAAGAGCTGTCGCTGGTGTTGCAAAATAATCCCGACTGGCAGCCGCACGATATTGCCGTTTTGACGCCGAACATCGAG
CCCTACAGCCCGTTTATCGAAGCTGTTTTTGGACAGGAGCAGGCCGGCAGCCAGGCTTTGCCGTATTCGATTTCGGATGT
AAAACTCAGCCGCCGTCAGCCCTTGTTGTATGCTTTGGCGCAAACGTTGGACTTGCTGGAAAGCCGGTTTGAAGTGGACA
AGGTTTTGCCTTTGCTGGAAAGCCGGTTGGTGCTGCAACGCTTCGGTTTGAGCGAAGAAGATGTGCCGCTGCTGCATGAG
GCTGTTGCCGGATTGAATGTGCATTGGGGTTTGGACCAAACCATGCGCGAGGGTAAAGACAACCTCTTTACTTGGCAGCA
GGCGGTAGAGCGTTTGGCCTTGGGCTGGATGCTGCCCGAAGGCGGCAACGGTATGTGGCAGGGCGTGAGCGCGTGGCATA
GCAACGTCAACCAGTTGGACGTGTTCAGCGGTTTTGCCGAATTTATCCGTACTTTGGCCGATATGGCGGCGCAATGGCAA
GAGCCTGCCGATGTGGAAGGCTGGGTGCAGCGTTGCCACGATTTGCTGGAGAAACTGTTTGCTCCGGATACGGACGACCA
ATACGCGAAACAGCAGTTTGAGCAGTCTTTGGCGAAATGGCAGGAAGAGGCGCAGTTGGCCGAATTTGACGGATTGTTGC
CGTGTAAAACCGTTATCCGCCATATCCGTCGTTTTTTGGACAGTGAAAGCCAAGCCGGATTTTTGAGCGGCGGCATTACT
TTTTGCAGTATGGTGCCGATGCGCAGCCTGCCGTTTAAAATGGTTTGCCTGTTGGGTTTGAATGACGGTGATTTTCCGCG
CAATACCAAAGCGGCGGTGTTCGACCTGATTGCCAAACATCCGAAAAAAGGCGACCGCGCCCGCCGCGACGACGACCGTT
ATCTTTTCCTCGAAGCCTTAATCAGCGCGCGCGAAATGCTGTATTTGTCTTATATCGGCCGCGATATACGCAATGATGCC
GAGTTTGCGCCGTCTTCGTTAATCAGCGAGCTGCTGGATACCATTGCCGCCATGACAGGGAAAAGCGGGCGCGAGTTGGC
GGAGAAATGGGTGAAACATCATCCTTTGCAGGCGTTTTCGCGCCGTTATTTCCAAAAGGATGCGCTTTCAGACGGCCTCT
TCAGTACGCGCCAAGATTACGCCGATGCGCTGAACCAACCGCCTACGCAACCGCAGCCGTTTTTCCTTGAGGCTTTAAGT
CAGGAAGAGCCGGGCAAAACCATTCAGCAGGGCGAGCTTATCAGTTTTTGGCGCAACCCTGTCAAAGTTTGGCTGAAGAG
AAATTTAAGCTGGGATCAGCCGTATTTGGACGGCGCATGGGAATCTGCCGAACCGTTTGAGCCGCAACATGAAGGCCGGA
TTGCCGATGCCTATTTGGATGCGCGGCGCAAAGGTGAAGATTTTGAAGATACGGCCATTCGGCTGAATGCAGAAAGCCTG
ATGCCGGTGGGCGAATTAGGCGGCTTGTGGCAGAAGCAGTATCAGATATCTGCGAAAAACGTAGATGCCGAGTTGATACG
CAGCAACAAAAGGCCGTCTGAACCTTATGAATTACACTTTGACGACTTGGTTTTACAAGGCACCATCGGCAATCTTTACG
AATGCGGACGCATTGTGTTCCAAAACCAAAAAGACAATGCGCCCAACCGCATTGCCCGTTTATTGGAGCATTTGATTTTT
TGCGCCGTCGCCCCTCAAACCGTTGCCAACCGACAAACCTATATTGTCAGCCTGGGACAGACCGAAACCTATGCCGCCAT
CGGGCAAGAGGCGGCGAGAGAGCTTTTGAAAGAATGGTTGGTATATTTCCGAATCGGACAAAATACCCCCTTGCCGTTTT
TTGCCAAAACCAGCCTTGCCGCTGCGGAGGAGTACGGCAAGAAAGAGGATTGGGATGCTGCCTTGAGAAAAGCCTATGAG
GTTTTTAACGGCAATAAAATGAACAAAGCGCAGAAAGAATATACCGAAGTGAAGCTGGTGTTCGGTCATTCGAACGAAGC
GCCGCTTGAAGAGCCGCTATTTGAAAACCTCGTCGTCAATCTGCTTGTTCCGCTTTTGAACAGCGCGGCAGGGAAAAACA
ATGCAACAGAACAGGAGTAA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)

RecC C-terminal domain (RecC_C)

(806-1024)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

64.872

99.727

0.647