Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   BBP27_RS04310 Genome accession   NZ_CP110721
Coordinates   907257..908060 (-) Length   267 a.a.
NCBI ID   WP_004519923.1    Uniprot ID   A0AB36GAR3
Organism   Neisseria sp. RH3002v2g     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 902257..913060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP27_RS04300 - 904436..905734 (-) 1299 WP_188211949.1 adenylosuccinate synthase -
  BBP27_RS04305 - 905778..906935 (-) 1158 WP_188211948.1 ATP phosphoribosyltransferase regulatory subunit -
  BBP27_RS04310 comL 907257..908060 (-) 804 WP_004519923.1 outer membrane protein assembly factor BamD Machinery gene
  BBP27_RS04315 rluD 908059..909183 (+) 1125 WP_188211947.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BBP27_RS04320 pgeF 909265..910035 (+) 771 WP_188211946.1 peptidoglycan editing factor PgeF -
  BBP27_RS04325 lptE 910156..910635 (+) 480 WP_070615229.1 LPS assembly lipoprotein LptE -
  BBP27_RS04330 holA 910635..911636 (+) 1002 WP_188211945.1 DNA polymerase III subunit delta -
  BBP27_RS04335 - 911782..912201 (+) 420 WP_003746427.1 hypothetical protein -
  BBP27_RS04340 - 912293..912817 (+) 525 WP_188211944.1 RDD family protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31038.02 Da        Isoelectric Point: 8.5345

>NTDB_id=755998 BBP27_RS04310 WP_004519923.1 907257..908060(-) (comL) [Neisseria sp. RH3002v2g]
MKKILLVVSLGLALSACANKGTIDKDAQITQDWSVEKLYAEAQDELNSNNYTRAVKLYEILESRFPNGRYAQQSQLDTAY
AYYKDDEPEKALAAIARFQRHHPQHPNMDYALYLKGLVLFNEDQSFLNKLASQDWSDRDPKANRDAYQAFAELVQRYPNS
KYAADATERMAKLVDALGGNEMSVARYYMKRGAYVAAANRAQKIVSRYQNTRYVEEALAMMELAYKKLDKPQLAADTRRV
LETNFPQSPFLQHEWRSDDMPWWRYWR

Nucleotide


Download         Length: 804 bp        

>NTDB_id=755998 BBP27_RS04310 WP_004519923.1 907257..908060(-) (comL) [Neisseria sp. RH3002v2g]
ATGAAAAAAATTCTTTTAGTAGTTTCTTTAGGTTTGGCACTGAGTGCCTGCGCAAATAAAGGCACAATCGATAAAGACGC
CCAAATTACTCAAGATTGGAGTGTGGAAAAGCTTTATGCCGAAGCGCAAGACGAATTGAACAGCAACAATTATACGCGAG
CTGTCAAGTTATACGAAATTTTAGAATCCCGTTTTCCAAACGGCCGCTATGCCCAGCAGTCCCAGTTGGATACGGCGTAT
GCCTATTATAAAGACGATGAGCCGGAAAAAGCCTTGGCTGCCATTGCGCGCTTCCAACGCCATCATCCGCAACATCCGAA
TATGGACTACGCGCTGTACTTGAAAGGTTTGGTCCTGTTTAACGAAGACCAGTCTTTCTTGAACAAGCTGGCTTCCCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGATGCTTATCAGGCGTTTGCCGAGTTGGTGCAACGTTATCCAAACAGC
AAATACGCTGCCGATGCAACCGAACGCATGGCCAAGCTGGTGGACGCTTTGGGCGGTAACGAAATGTCTGTGGCGCGTTA
TTACATGAAACGCGGTGCTTATGTCGCAGCGGCCAACCGTGCGCAAAAAATCGTCAGCCGTTACCAAAATACCCGTTATG
TCGAAGAAGCTTTGGCGATGATGGAATTGGCGTACAAAAAACTGGACAAGCCGCAACTGGCCGCCGATACACGCCGCGTT
TTGGAAACCAACTTCCCTCAAAGCCCGTTCTTGCAACACGAATGGCGATCTGACGATATGCCTTGGTGGCGTTACTGGCG
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

88.722

99.625

0.884
  comL Neisseria gonorrhoeae MS11

87.97

99.625

0.876