Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   BBP27_RS02570 Genome accession   NZ_CP110721
Coordinates   539657..540205 (-) Length   182 a.a.
NCBI ID   WP_188211619.1    Uniprot ID   -
Organism   Neisseria sp. RH3002v2g     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 534657..545205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP27_RS02545 - 535754..536323 (-) 570 WP_070583408.1 RNA 2'-phosphotransferase -
  BBP27_RS02550 trpE 536367..537842 (-) 1476 WP_070583410.1 anthranilate synthase component I -
  BBP27_RS02555 - 537978..538355 (-) 378 WP_036490612.1 hypothetical protein -
  BBP27_RS02560 - 538491..539111 (+) 621 WP_070583413.1 Smr/MutS family protein -
  BBP27_RS02565 pilL 539164..539652 (-) 489 WP_188211618.1 PilX family type IV pilin Machinery gene
  BBP27_RS02570 pilK 539657..540205 (-) 549 WP_188211619.1 pilus assembly protein Machinery gene
  BBP27_RS02575 pilJ 540184..541119 (-) 936 WP_188211620.1 pilus assembly protein PilW Machinery gene
  BBP27_RS02580 pilV 541122..541787 (-) 666 WP_188211621.1 type IV pilus modification protein PilV -
  BBP27_RS02585 pilH 541803..542480 (-) 678 WP_188211622.1 GspH/FimT family pseudopilin Machinery gene
  BBP27_RS02590 dnaB 542640..544046 (-) 1407 WP_188211623.1 replicative DNA helicase -
  BBP27_RS02595 - 544201..544782 (+) 582 WP_003683473.1 Fe-Mn family superoxide dismutase -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20397.23 Da        Isoelectric Point: 8.4471

>NTDB_id=755990 BBP27_RS02570 WP_188211619.1 539657..540205(-) (pilK) [Neisseria sp. RH3002v2g]
MRRPITLIKPDRQQGYALFIVLMMMIVIALLVVTATQSYNTEQRISTNDADRKLATSLAEAALREGENQIFDIEGKKTNF
TKECKDGFCATPNVKSDSEAIEETATEDAWKRKCDKNQNLCIDANGKEYSLGKNSGIAKNPRYIIEYLGKTTEGRITYRV
TAKAWGKNANTQVVLQSYIASE

Nucleotide


Download         Length: 549 bp        

>NTDB_id=755990 BBP27_RS02570 WP_188211619.1 539657..540205(-) (pilK) [Neisseria sp. RH3002v2g]
ATGCGCCGACCGATCACTCTAATAAAACCTGACCGGCAACAAGGCTATGCTTTGTTTATCGTATTAATGATGATGATCGT
CATCGCCCTGCTCGTGGTTACAGCCACCCAGTCCTACAATACCGAACAGCGTATCAGCACCAACGATGCCGACCGCAAAC
TGGCAACCTCCTTGGCCGAAGCCGCATTGCGTGAAGGTGAAAATCAAATTTTTGATATTGAAGGGAAAAAGACTAATTTT
ACCAAAGAGTGTAAAGATGGTTTTTGCGCCACACCTAACGTGAAATCTGACAGCGAAGCCATCGAAGAAACCGCTACTGA
AGATGCCTGGAAAAGAAAATGTGATAAAAATCAAAATCTTTGCATCGATGCCAACGGTAAAGAATACTCTCTAGGTAAAA
ATAGCGGCATTGCAAAAAATCCACGCTACATCATTGAATATTTAGGTAAAACTACTGAAGGCCGAATCACCTACCGCGTT
ACCGCCAAAGCATGGGGTAAGAATGCCAATACCCAAGTCGTCCTTCAGTCTTACATTGCCAGCGAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(87-180)

PilX N-terminal (PilX_N)

(14-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

54.229

100

0.599