Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   BBP27_RS02585 Genome accession   NZ_CP110721
Coordinates   541803..542480 (-) Length   225 a.a.
NCBI ID   WP_188211622.1    Uniprot ID   -
Organism   Neisseria sp. RH3002v2g     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 536803..547480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP27_RS02555 - 537978..538355 (-) 378 WP_036490612.1 hypothetical protein -
  BBP27_RS02560 - 538491..539111 (+) 621 WP_070583413.1 Smr/MutS family protein -
  BBP27_RS02565 pilL 539164..539652 (-) 489 WP_188211618.1 PilX family type IV pilin Machinery gene
  BBP27_RS02570 pilK 539657..540205 (-) 549 WP_188211619.1 pilus assembly protein Machinery gene
  BBP27_RS02575 pilJ 540184..541119 (-) 936 WP_188211620.1 pilus assembly protein PilW Machinery gene
  BBP27_RS02580 pilV 541122..541787 (-) 666 WP_188211621.1 type IV pilus modification protein PilV -
  BBP27_RS02585 pilH 541803..542480 (-) 678 WP_188211622.1 GspH/FimT family pseudopilin Machinery gene
  BBP27_RS02590 dnaB 542640..544046 (-) 1407 WP_188211623.1 replicative DNA helicase -
  BBP27_RS02595 - 544201..544782 (+) 582 WP_003683473.1 Fe-Mn family superoxide dismutase -
  BBP27_RS02600 - 545008..546549 (+) 1542 WP_049322676.1 OFA family MFS transporter -
  BBP27_RS02605 - 546608..547453 (-) 846 WP_188211624.1 DUF817 domain-containing protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25292.52 Da        Isoelectric Point: 6.2538

>NTDB_id=755992 BBP27_RS02585 WP_188211622.1 541803..542480(-) (pilH) [Neisseria sp. RH3002v2g]
MYQTQKGFTLIELLIVITIAAVMAVIALPNMNQWIASRRAASQAEQIANLLRFARNEAVRLNLPVYICPAKIKSDGSHNG
CIHKKNSTSTSIGMLAYADKNENSSYQNDEDDLSIRYIILNGDTEKVEYRFDYIPIGTSRSPLSSSDPKEVWWKFLRNGT
FEYSNNKGESYQFSDGYIKISLTDKSAADPETKKARATVLLINGNGHVEICAKNDDREICEYTSE

Nucleotide


Download         Length: 678 bp        

>NTDB_id=755992 BBP27_RS02585 WP_188211622.1 541803..542480(-) (pilH) [Neisseria sp. RH3002v2g]
ATGTATCAGACACAAAAAGGCTTCACCCTAATTGAGTTGCTGATCGTCATTACTATTGCAGCAGTAATGGCCGTCATCGC
ACTTCCCAATATGAATCAATGGATTGCCTCCAGACGTGCGGCATCGCAAGCAGAGCAAATTGCCAATCTGCTGCGCTTCG
CGCGTAATGAGGCCGTCCGTCTCAATCTTCCCGTTTACATCTGCCCGGCCAAAATCAAATCCGATGGCTCGCATAATGGT
TGCATTCACAAAAAAAACAGTACCAGTACCAGTATTGGTATGTTGGCCTACGCCGATAAAAACGAAAATTCCAGCTATCA
AAATGATGAAGACGATTTATCTATCCGCTACATCATTCTCAATGGCGACACTGAAAAAGTGGAATACCGCTTCGACTATA
TTCCCATCGGTACTTCACGTTCCCCCCTCTCCTCTTCCGATCCAAAAGAAGTCTGGTGGAAATTCCTGCGCAATGGTACA
TTTGAATATTCAAACAATAAGGGCGAGAGTTATCAATTTTCAGACGGCTACATCAAAATCAGCCTAACAGATAAATCCGC
TGCCGATCCTGAAACCAAAAAAGCCCGTGCTACCGTACTTTTAATTAATGGCAATGGGCATGTCGAAATCTGTGCTAAAA
ACGATGATCGCGAAATATGCGAATACACTTCCGAATAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(43-196)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

51.111

100

0.511