Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   OOL18_RS08215 Genome accession   NZ_CP110664
Coordinates   1740971..1741315 (-) Length   114 a.a.
NCBI ID   WP_005599904.1    Uniprot ID   A3N254
Organism   Actinobacillus pleuropneumoniae strain AP_123     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1735971..1746315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOL18_RS08195 - 1736023..1736676 (-) 654 WP_103034748.1 IS1595 family transposase -
  OOL18_RS08200 - 1736716..1737366 (-) 651 Protein_1589 N-6 DNA methylase -
  OOL18_RS08205 hsdR 1737450..1739813 (-) 2364 WP_039709276.1 EcoAI/FtnUII family type I restriction enzme subunit R -
  OOL18_RS08210 asd 1739930..1740820 (-) 891 WP_005602033.1 archaetidylserine decarboxylase -
  OOL18_RS08215 comEA/comE1 1740971..1741315 (-) 345 WP_005599904.1 ComEA family DNA-binding protein Machinery gene
  OOL18_RS08220 - 1741616..1743007 (+) 1392 WP_039709275.1 LysM-like peptidoglycan-binding domain-containing protein -
  OOL18_RS08225 - 1743129..1743533 (+) 405 WP_005599908.1 MliC family protein -
  OOL18_RS08230 waaF 1743615..1744652 (+) 1038 WP_005619838.1 lipopolysaccharide heptosyltransferase II -
  OOL18_RS08235 rfaC 1744727..1745686 (+) 960 WP_005602025.1 lipopolysaccharide heptosyltransferase RfaC -
  OOL18_RS08240 rpsL 1745808..1746182 (+) 375 WP_005543325.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12446.30 Da        Isoelectric Point: 10.2030

>NTDB_id=755835 OOL18_RS08215 WP_005599904.1 1740971..1741315(-) (comEA/comE1) [Actinobacillus pleuropneumoniae strain AP_123]
MKKFARFSISFIIALLSADSIAKPNNPPVSEPTPVVQQMTTTNKTADKQNQVNINTADAAEIKSKLVGIGEKKAQAIVDY
RTKNGAFITIEQLTEVSGIGKATLEKNRERITLE

Nucleotide


Download         Length: 345 bp        

>NTDB_id=755835 OOL18_RS08215 WP_005599904.1 1740971..1741315(-) (comEA/comE1) [Actinobacillus pleuropneumoniae strain AP_123]
ATGAAAAAATTTGCCCGATTTAGTATTAGCTTCATCATTGCATTGTTATCCGCCGATTCAATCGCAAAGCCTAATAATCC
GCCCGTTTCCGAACCGACTCCCGTAGTTCAACAAATGACAACAACGAACAAAACTGCCGATAAACAAAATCAAGTGAATA
TCAATACGGCGGATGCAGCGGAAATTAAATCCAAACTGGTGGGAATCGGTGAGAAAAAAGCACAAGCGATTGTCGATTAC
CGCACTAAAAACGGTGCTTTTATTACGATAGAACAACTAACGGAAGTCTCCGGAATCGGTAAAGCGACACTAGAGAAAAA
TCGCGAACGCATCACGTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(48-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N254

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

58.261

100

0.588
  comE1/comEA Haemophilus influenzae Rd KW20

47.115

91.228

0.43