Detailed information NTG0755765

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ONZ57_RS19970
• Genome accession: NZ_CP110654
• Coordinates: 4211913..4212788 (+)
• Length: 291 a.a.
• NCBI ID: WP_005314162.1
• Uniprot ID: A2T195
• Organism: Aeromonas salmonicida strain AS1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4206913..4217788

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ONZ57_RS19945 (ONZ57_19950)	-	4207271..4207654 (+)	384	WP_088814130.1	pilin	-
ONZ57_RS19950 (ONZ57_19955)	-	4207699..4208616 (+)	918	WP_271759374.1	IS5-like element ISAs4 family transposase	-
ONZ57_RS19955 (ONZ57_19960)	-	4208660..4208770 (+)	111	Protein_3851	pilus assembly protein TapA	-
ONZ57_RS19960 (ONZ57_19965)	pilB	4208774..4210480 (+)	1707	WP_088814128.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
ONZ57_RS19965 (ONZ57_19970)	-	4210861..4211849 (+)	989	Protein_3853	type II secretion system F family protein	-
ONZ57_RS19970 (ONZ57_19975)	pilD	4211913..4212788 (+)	876	WP_005314162.1	prepilin peptidase	Machinery gene
ONZ57_RS19975 (ONZ57_19980)	coaE	4212808..4213422 (+)	615	WP_042468303.1	dephospho-CoA kinase	-
ONZ57_RS19980 (ONZ57_19985)	zapD	4213460..4214182 (+)	723	WP_005314166.1	cell division protein ZapD	-
ONZ57_RS19985 (ONZ57_19990)	yacG	4214192..4214386 (+)	195	WP_005314167.1	DNA gyrase inhibitor YacG	-
ONZ57_RS19990 (ONZ57_19995)	mutT	4214463..4214870 (-)	408	WP_005314168.1	8-oxo-dGTP diphosphatase MutT	-
ONZ57_RS19995 (ONZ57_20000)	-	4214879..4216063 (-)	1185	WP_042468305.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32500.78 Da
• Isoelectric Point: 6.9383

>NTDB_id=755765 ONZ57_RS19970 WP_005314162.1 4211913..4212788(+) (pilD) [Aeromonas salmonicida strain AS1]
MTLLLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFSSDTPQPEDDERYNLMVPRSCCPRCNH
PITALENIPLLSWLWLKGRCRGCQAAISARYPLVELLTALLSVVVAMTLTPGWGTLAALLLTWVLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLLGGYVPLGDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LVGAIFGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYLSTIL

Nucleotide

• Length: 876 bp

>NTDB_id=755765 ONZ57_RS19970 WP_005314162.1 4211913..4212788(+) (pilD) [Aeromonas salmonicida strain AS1]
ATGACACTTCTTCTCGAGCTGGCACACGGCTTGCCATGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTTCTCAACGTGGTGATCCACCGCCTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATATCGCAGCTATTTCA
GTTCAGACACGCCGCAGCCAGAAGATGACGAGCGCTACAATCTGATGGTGCCGCGCTCCTGCTGCCCTCGCTGCAATCAC
CCCATAACGGCCTTGGAAAACATTCCCCTGCTGAGCTGGCTCTGGCTCAAAGGTCGCTGCCGGGGCTGCCAGGCCGCCAT
TTCGGCTCGCTATCCGCTGGTGGAGCTGCTGACCGCGCTGCTCTCTGTGGTGGTTGCCATGACGCTCACCCCTGGCTGGG
GCACGCTGGCTGCCCTCCTGCTGACCTGGGTGCTGGTGGCGCTCACCTTTATCGATCTGGACAAGATGCTGCTGCCGGAC
CAGCTCACCTTGCCGCTACTGTGGGGCGGGCTGCTGTTCAACCTGCTGGGCGGATACGTGCCTCTCGGCGATGCTGTCAT
CGGCGCCATGGCAGGCTATCTGGTGCTGTGGAGCCTCTACTGGGCCTTCAAGCTGCTTACCGGCAAGGAGGGCATGGGCT
ATGGGGACTTCAAACTGCTGGCAGCGCTGGGAGCCTGGCTTGGCTGGCAGGCGCTGCCCATAGTACTGCTGCTCTCTTCT
CTGGTCGGCGCCATCTTCGGCATTGGCCTCATTTTGCTGCGCAACCATCACCAGAGCAAACCCATCCCCTTTGGCCCCTA
TCTCGCCATCGCAGGCTGGATCGCACTGCTCTGGGGCGATAGCATCACCCGCTGGTATCTCTCCACTATCCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

3D structure

• AlphaFold DB: A2T195

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.764	98.969	0.601
pilD	Vibrio campbellii strain DS40M4	55.556	98.969	0.55
pilD	Acinetobacter baumannii D1279779	55.39	92.44	0.512
pilD	Acinetobacter nosocomialis M2	55.39	92.44	0.512
pilD	Neisseria gonorrhoeae MS11	50.746	92.096	0.467