Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   OO001_RS08720 Genome accession   NZ_CP110611
Coordinates   1846917..1847492 (-) Length   191 a.a.
NCBI ID   WP_001829272.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain CCSM0287     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1841917..1852492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO001_RS08680 - 1842613..1842828 (+) 216 WP_001831694.1 TM2 domain-containing protein -
  OO001_RS12180 - 1842932..1843048 (+) 117 WP_353616739.1 SAR1012 family small protein -
  OO001_RS08685 - 1843479..1843637 (+) 159 WP_001829449.1 hypothetical protein -
  OO001_RS08690 - 1843707..1844219 (-) 513 WP_322114128.1 LysE family transporter -
  OO001_RS08695 - 1844327..1844668 (-) 342 WP_002456621.1 fatty acid desaturase -
  OO001_RS08700 - 1844881..1845117 (-) 237 WP_001829451.1 hypothetical protein -
  OO001_RS12185 mobV 1845319..1845879 (-) 561 Protein_1686 MobV family relaxase -
  OO001_RS08720 comK/comK1 1846917..1847492 (-) 576 WP_001829272.1 competence protein ComK Regulator
  OO001_RS08725 - 1847707..1847925 (+) 219 WP_001829292.1 IDEAL domain-containing protein -
  OO001_RS08730 - 1848003..1848989 (-) 987 WP_001829269.1 lipoate--protein ligase -
  OO001_RS08735 - 1849194..1849379 (+) 186 WP_001829339.1 DUF2187 family protein -
  OO001_RS08740 - 1849385..1849987 (+) 603 WP_001829312.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  OO001_RS08745 - 1850090..1851595 (-) 1506 WP_001829277.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22782.87 Da        Isoelectric Point: 9.2887

>NTDB_id=755351 OO001_RS08720 WP_001829272.1 1846917..1847492(-) (comK/comK1) [Staphylococcus epidermidis strain CCSM0287]
MTHLPETIYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTRKESPFKVQRIIERSCKFYGNNYISKKAETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQEENIWINMHYIENVKELKNRKSKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYMVDKQSRM
KSNNPEQPIDYNQSSLNIFEALSRYSLFEEN

Nucleotide


Download         Length: 576 bp        

>NTDB_id=755351 OO001_RS08720 WP_001829272.1 1846917..1847492(-) (comK/comK1) [Staphylococcus epidermidis strain CCSM0287]
ATGACACATTTACCCGAAACGATTTATGTTATACGAAAAGGTGATATGGTAATACGACCTAAATATGATGAATATCAGCA
AACAAATGGTACTGAAATTATCAGATTTGATCAAACTCGCAAAGAAAGTCCATTTAAAGTACAGAGAATTATCGAAAGAT
CATGTAAATTTTATGGTAATAATTATATTAGTAAAAAAGCAGAAACGAATCGTATTACTGGAATCTCTAGTAAACCACCT
ATTTTACTTACGCCTCTTTTTCCTACTTACTTTTTTCCAACTCACTCAGACCGTCAAGAAGAAAATATATGGATTAATAT
GCATTATATTGAAAATGTTAAAGAACTTAAAAATCGTAAGAGTAAAATAATTTTTGCGAATGGTGATTCGTTAACGCTCA
ATGTATCATTTCATAGCTTGTGGCATCAATATACGAATGCAATCATCTATTATTACATGGTAGATAAGCAATCACGAATG
AAATCTAACAACCCTGAACAACCCATTGACTATAATCAGTCTTCTCTAAATATTTTCGAGGCGCTCTCACGCTACTCCCT
TTTTGAAGAAAATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.757

96.859

0.743
  comK/comK1 Staphylococcus aureus N315

76.757

96.859

0.743