Detailed information    

insolico Bioinformatically predicted

Overview

Name   braS   Type   Regulator
Locus tag   OO001_RS01260 Genome accession   NZ_CP110611
Coordinates   300392..301288 (+) Length   298 a.a.
NCBI ID   WP_002456718.1    Uniprot ID   A0A2T4LGX3
Organism   Staphylococcus epidermidis strain CCSM0287     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 295392..306288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO001_RS01240 - 296079..297622 (+) 1544 Protein_246 NAD(P)H-binding protein -
  OO001_RS01245 - 297745..299214 (-) 1470 WP_002456720.1 alkaline phosphatase -
  OO001_RS01250 - 299511..299690 (+) 180 WP_002456719.1 hypothetical protein -
  OO001_RS01255 braR 299721..300386 (+) 666 WP_001830679.1 response regulator transcription factor Regulator
  OO001_RS01260 braS 300392..301288 (+) 897 WP_002456718.1 HAMP domain-containing sensor histidine kinase Regulator
  OO001_RS01265 - 301399..302148 (+) 750 WP_002456717.1 ABC transporter ATP-binding protein -
  OO001_RS01270 - 302150..304162 (+) 2013 WP_002470142.1 ABC transporter permease -
  OO001_RS01275 - 304266..304856 (+) 591 WP_002456715.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 34883.51 Da        Isoelectric Point: 6.8361

>NTDB_id=755328 OO001_RS01260 WP_002456718.1 300392..301288(+) (braS) [Staphylococcus epidermidis strain CCSM0287]
MKFAYIQSIRNEISIILIILLFFALIFYVFSLPFDAYVLAISIILLLMCVRWWIKYLSFKKNEHLKDKVAYLEHELAHVK
NQQIEYRNDVESYFLTWVHQIKTPITASQLLLERNEENVVNRVRQEIVHIDNYTSLALSYLKLLNEESDMTITKVTVDDL
IRPLILKYRIQFIEQKTQIHYEKSEDIILTDAQWASIMIEQLLNNALKYAKGKDIWIDFDVANQTLQIKDNGIGISKADI
PKIFDKGYSGFNGRLNEQSTGIGLFIVQHIANHLNIQVTVQSELNHGTVFFIHFTKEK

Nucleotide


Download         Length: 897 bp        

>NTDB_id=755328 OO001_RS01260 WP_002456718.1 300392..301288(+) (braS) [Staphylococcus epidermidis strain CCSM0287]
ATGAAGTTTGCATATATTCAATCGATTCGTAATGAGATTTCAATTATTTTAATAATTCTATTATTTTTTGCACTTATATT
TTATGTGTTTTCTTTACCTTTTGATGCATACGTACTAGCAATCAGTATAATATTACTATTGATGTGTGTACGTTGGTGGA
TAAAGTATTTAAGTTTTAAAAAGAATGAACATCTTAAAGATAAAGTAGCATATTTAGAACATGAGTTAGCACATGTTAAG
AATCAGCAAATTGAATATCGTAACGATGTTGAAAGTTATTTTTTAACATGGGTACATCAAATTAAAACACCTATCACTGC
CTCACAATTACTTTTGGAGAGAAACGAGGAGAATGTAGTTAATCGTGTTCGACAAGAAATTGTGCACATTGATAATTATA
CAAGTCTCGCATTAAGTTATTTAAAATTATTAAATGAAGAGTCAGATATGACAATTACCAAAGTGACAGTTGATGATTTG
ATTCGCCCGTTGATTTTAAAATATAGAATTCAGTTTATTGAACAAAAGACGCAAATCCATTATGAAAAAAGTGAGGACAT
TATTTTAACCGATGCACAATGGGCTTCTATAATGATAGAGCAACTTTTAAATAATGCTTTAAAATATGCTAAAGGTAAAG
ATATTTGGATAGATTTTGATGTTGCCAATCAAACTCTACAGATTAAAGATAATGGTATTGGGATTAGTAAAGCAGATATT
CCTAAAATTTTTGATAAAGGATACTCAGGATTTAACGGTAGATTGAATGAACAATCAACTGGTATAGGTCTATTTATAGT
GCAACACATTGCAAATCATTTAAATATACAAGTAACTGTACAATCAGAGTTGAATCATGGGACAGTATTTTTTATACATT
TTACTAAAGAAAAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(197-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T4LGX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braS Staphylococcus aureus N315

60.339

98.993

0.597