Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   OMP06_RS08545 Genome accession   NZ_CP110462
Coordinates   1780010..1780390 (+) Length   126 a.a.
NCBI ID   WP_000836914.1    Uniprot ID   A0A098SJS3
Organism   Acinetobacter baumannii strain RBH2     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1775010..1785390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMP06_RS08515 (OMP06_08515) kdsB 1775913..1776674 (+) 762 WP_000680695.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OMP06_RS08520 (OMP06_08520) - 1776686..1777666 (+) 981 WP_001075407.1 DNA polymerase III subunit delta' -
  OMP06_RS08525 (OMP06_08525) - 1777678..1778019 (+) 342 WP_001183025.1 PilZ domain-containing protein -
  OMP06_RS08530 (OMP06_08530) - 1778037..1778810 (+) 774 WP_000497299.1 TatD family hydrolase -
  OMP06_RS08535 (OMP06_08535) - 1778848..1779456 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  OMP06_RS08540 (OMP06_08540) - 1779466..1780020 (+) 555 WP_000841373.1 type II secretion system protein -
  OMP06_RS08545 (OMP06_08545) xcpV 1780010..1780390 (+) 381 WP_000836914.1 type II secretion system minor pseudopilin GspI Machinery gene
  OMP06_RS08550 (OMP06_08550) xcpW 1780390..1781091 (+) 702 WP_000594580.1 type II secretion system minor pseudopilin GspJ Machinery gene
  OMP06_RS08555 (OMP06_08555) gspK 1781091..1782050 (+) 960 WP_265167996.1 type II secretion system minor pseudopilin GspK -
  OMP06_RS08560 (OMP06_08560) - 1782280..1782876 (+) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  OMP06_RS08565 (OMP06_08565) ung 1782927..1783640 (+) 714 WP_001177528.1 uracil-DNA glycosylase -
  OMP06_RS08570 (OMP06_08570) - 1783637..1784761 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  OMP06_RS08575 (OMP06_08575) tadA 1784768..1785271 (+) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14074.34 Da        Isoelectric Point: 10.0341

>NTDB_id=755001 OMP06_RS08545 WP_000836914.1 1780010..1780390(+) (xcpV) [Acinetobacter baumannii strain RBH2]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKRKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=755001 OMP06_RS08545 WP_000836914.1 1780010..1780390(+) (xcpV) [Acinetobacter baumannii strain RBH2]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGAG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098SJS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992