Detailed information NTG0755002

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: OMP06_RS08550
• Genome accession: NZ_CP110462
• Coordinates: 1780390..1781091 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594580.1
• Uniprot ID: A0A836YMN8
• Organism: Acinetobacter baumannii strain RBH2
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1775390..1786091

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OMP06_RS08515 (OMP06_08515)	kdsB	1775913..1776674 (+)	762	WP_000680695.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
OMP06_RS08520 (OMP06_08520)	-	1776686..1777666 (+)	981	WP_001075407.1	DNA polymerase III subunit delta'	-
OMP06_RS08525 (OMP06_08525)	-	1777678..1778019 (+)	342	WP_001183025.1	PilZ domain-containing protein	-
OMP06_RS08530 (OMP06_08530)	-	1778037..1778810 (+)	774	WP_000497299.1	TatD family hydrolase	-
OMP06_RS08535 (OMP06_08535)	-	1778848..1779456 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
OMP06_RS08540 (OMP06_08540)	-	1779466..1780020 (+)	555	WP_000841373.1	type II secretion system protein	-
OMP06_RS08545 (OMP06_08545)	xcpV	1780010..1780390 (+)	381	WP_000836914.1	type II secretion system minor pseudopilin GspI	Machinery gene
OMP06_RS08550 (OMP06_08550)	xcpW	1780390..1781091 (+)	702	WP_000594580.1	type II secretion system minor pseudopilin GspJ	Machinery gene
OMP06_RS08555 (OMP06_08555)	gspK	1781091..1782050 (+)	960	WP_265167996.1	type II secretion system minor pseudopilin GspK	-
OMP06_RS08560 (OMP06_08560)	-	1782280..1782876 (+)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
OMP06_RS08565 (OMP06_08565)	ung	1782927..1783640 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
OMP06_RS08570 (OMP06_08570)	-	1783637..1784761 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
OMP06_RS08575 (OMP06_08575)	tadA	1784768..1785271 (+)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
OMP06_RS08580 (OMP06_08580)	-	1785341..1785784 (+)	444	WP_001246676.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26673.64 Da
• Isoelectric Point: 9.5501

>NTDB_id=755002 OMP06_RS08550 WP_000594580.1 1780390..1781091(+) (xcpW) [Acinetobacter baumannii strain RBH2]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=755002 OMP06_RS08550 WP_000594580.1 1780390..1781091(+) (xcpW) [Acinetobacter baumannii strain RBH2]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

3D structure

• AlphaFold DB: A0A836YMN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.712	100	0.987