Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HPK28_RS00040 Genome accession   NZ_CP110417
Coordinates   10978..11571 (+) Length   197 a.a.
NCBI ID   WP_050338058.1    Uniprot ID   A0A241RQ54
Organism   Lactiplantibacillus pentosus strain OHF 23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5978..16571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPK28_RS00030 (HPK28_00030) gyrA 6921..9473 (+) 2553 WP_050338355.1 DNA gyrase subunit A -
  HPK28_RS00035 (HPK28_00035) rpsF 10642..10941 (+) 300 WP_003637271.1 30S ribosomal protein S6 -
  HPK28_RS00040 (HPK28_00040) ssb 10978..11571 (+) 594 WP_050338058.1 single-stranded DNA-binding protein Machinery gene
  HPK28_RS00045 (HPK28_00045) rpsR 11610..11846 (+) 237 WP_003637273.1 30S ribosomal protein S18 -
  HPK28_RS00050 (HPK28_00050) - 12023..14035 (+) 2013 WP_050338057.1 DHH family phosphoesterase -
  HPK28_RS00055 (HPK28_00055) rplI 14049..14501 (+) 453 WP_050338056.1 50S ribosomal protein L9 -
  HPK28_RS00060 (HPK28_00060) dnaB 14517..15947 (+) 1431 WP_050338055.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21368.79 Da        Isoelectric Point: 4.7453

>NTDB_id=754918 HPK28_RS00040 WP_050338058.1 10978..11571(+) (ssb) [Lactiplantibacillus pentosus strain OHF 23]
MINRTILVGRLTRDPELRYTNGGAAVATFTIAVNRQFTNQNGEREADFISCVIWRKAAENFANFTHKGSLVGIDGRIQTR
NYENQQGVRVYVTEVVVENFSLLESRAESERHQAANGGSNNNYNNGNSNYNNNSGYSNQGQNAAPQQSSANNNNPFGNGN
AGNANSAAPSSSANNNQADPFANNGDQIDISDDDLPF

Nucleotide


Download         Length: 594 bp        

>NTDB_id=754918 HPK28_RS00040 WP_050338058.1 10978..11571(+) (ssb) [Lactiplantibacillus pentosus strain OHF 23]
ATGATTAACCGTACAATTCTTGTTGGCCGACTAACAAGAGATCCGGAATTACGTTACACGAATGGTGGTGCCGCCGTCGC
GACATTCACAATTGCCGTAAACCGTCAATTCACGAATCAAAATGGGGAACGTGAAGCAGATTTTATCAGCTGCGTCATCT
GGCGTAAAGCTGCTGAAAACTTTGCTAACTTCACCCATAAAGGCTCGCTTGTTGGAATCGATGGCCGGATTCAAACCCGG
AACTACGAAAACCAACAAGGGGTACGAGTTTACGTTACAGAAGTTGTCGTTGAAAACTTCTCACTACTAGAATCACGTGC
AGAGTCTGAACGTCATCAGGCTGCTAATGGTGGTAGTAATAACAATTACAACAATGGTAATTCGAATTACAACAATAATA
GTGGGTATAGTAATCAAGGCCAAAATGCGGCTCCTCAACAATCATCAGCGAATAACAACAACCCATTTGGGAATGGTAAC
GCCGGTAATGCGAACAGTGCCGCACCATCAAGCAGTGCGAACAATAACCAAGCCGATCCATTTGCGAATAATGGCGATCA
GATTGATATCTCGGATGATGATTTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A241RQ54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

63.452

100

0.635
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.315

100

0.543