Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   QJP85_RS20675 Genome accession   NZ_CP124343
Coordinates   4227947..4228423 (-) Length   158 a.a.
NCBI ID   WP_001186779.1    Uniprot ID   -
Organism   Escherichia coli strain AVS0533     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4222947..4233423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJP85_RS25650 - 4225061..4225366 (-) 306 Protein_4053 helix-turn-helix domain-containing protein -
  QJP85_RS25655 - 4225629..4225763 (-) 135 Protein_4054 transcriptional regulator -
  QJP85_RS20645 (QJP85_20645) - 4225733..4225882 (-) 150 Protein_4055 hypothetical protein -
  QJP85_RS20650 (QJP85_20650) - 4225988..4226164 (-) 177 WP_000839286.1 DUF957 domain-containing protein -
  QJP85_RS20655 (QJP85_20655) - 4226181..4226669 (-) 489 WP_000761690.1 DUF5983 family protein -
  QJP85_RS20660 (QJP85_20660) - 4226666..4227043 (-) 378 WP_000854770.1 TA system toxin CbtA family protein -
  QJP85_RS20665 (QJP85_20665) - 4227132..4227500 (-) 369 WP_001280950.1 type IV toxin-antitoxin system YeeU family antitoxin -
  QJP85_RS20670 (QJP85_20670) - 4227663..4227884 (-) 222 WP_001220314.1 DUF987 domain-containing protein -
  QJP85_RS20675 (QJP85_20675) radC 4227947..4228423 (-) 477 WP_001186779.1 RadC family protein Machinery gene
  QJP85_RS20680 (QJP85_20680) - 4228439..4228903 (-) 465 WP_000855061.1 antirestriction protein -
  QJP85_RS20685 (QJP85_20685) - 4229245..4230063 (-) 819 WP_001234712.1 DUF932 domain-containing protein -
  QJP85_RS20690 (QJP85_20690) - 4230181..4230376 (-) 196 Protein_4064 DUF905 family protein -
  QJP85_RS20695 (QJP85_20695) - 4230447..4232348 (-) 1902 Protein_4065 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17635.23 Da        Isoelectric Point: 7.2523

>NTDB_id=754633 QJP85_RS20675 WP_001186779.1 4227947..4228423(-) (radC) [Escherichia coli strain AVS0533]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLLLNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALHHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=754633 QJP85_RS20675 WP_001186779.1 4227947..4228423(-) (radC) [Escherichia coli strain AVS0533]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACTCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGCTTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGCACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGTCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399