Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   LFL98_RS06040 Genome accession   NZ_CP110365
Coordinates   1166739..1166930 (+) Length   63 a.a.
NCBI ID   WP_003224559.1    Uniprot ID   G4NWD2
Organism   Bacillus subtilis strain HY2-62     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1161739..1171930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL98_RS06010 (LFL98_06015) argF 1162604..1163563 (+) 960 WP_088325579.1 ornithine carbamoyltransferase -
  LFL98_RS06015 (LFL98_06020) yjzC 1163649..1163828 (+) 180 WP_003245356.1 YjzC family protein -
  LFL98_RS06020 (LFL98_06025) yjzD 1163874..1164059 (-) 186 WP_003245236.1 DUF2929 domain-containing protein -
  LFL98_RS06025 (LFL98_06030) - 1164308..1165042 (+) 735 WP_003245223.1 hypothetical protein -
  LFL98_RS06030 (LFL98_06035) - 1165124..1165681 (+) 558 WP_015252365.1 hypothetical protein -
  LFL98_RS06035 (LFL98_06040) med 1165771..1166724 (+) 954 WP_014476425.1 transcriptional regulator Med Regulator
  LFL98_RS06040 (LFL98_06045) comZ 1166739..1166930 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  LFL98_RS06045 (LFL98_06050) yjzB 1166960..1167199 (-) 240 WP_003232972.1 spore coat protein YjzB -
  LFL98_RS06050 (LFL98_06055) fabH 1167364..1168302 (+) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  LFL98_RS06055 (LFL98_06060) fabF 1168325..1169566 (+) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  LFL98_RS06060 (LFL98_06065) yjaZ 1169642..1170427 (+) 786 WP_277737058.1 DUF2268 domain-containing protein -
  LFL98_RS06065 (LFL98_06070) appD 1170619..1171605 (+) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7214.27 Da        Isoelectric Point: 4.2564

>NTDB_id=754605 LFL98_RS06040 WP_003224559.1 1166739..1166930(+) (comZ) [Bacillus subtilis strain HY2-62]
MQHEKSLEFLQIAMKYLPEAKEQLEKSGIELSMEAIQPFMNLFTTVMAEAYELGKSDAKSETE

Nucleotide


Download         Length: 192 bp        

>NTDB_id=754605 LFL98_RS06040 WP_003224559.1 1166739..1166930(+) (comZ) [Bacillus subtilis strain HY2-62]
ATGCAGCACGAAAAATCACTTGAATTCTTGCAAATTGCCATGAAATATCTCCCTGAAGCGAAAGAACAGCTTGAGAAATC
AGGCATTGAGCTCTCAATGGAGGCCATCCAGCCGTTTATGAATCTATTTACAACGGTAATGGCGGAAGCTTATGAGCTTG
GCAAGTCTGACGCTAAATCTGAAACAGAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWD2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

100

100

1