Detailed information NTG0754604

Bioinformatically predicted

Overview

• Name: med
• Type: Regulator
• Locus tag: LFL98_RS06035
• Genome accession: NZ_CP110365
• Coordinates: 1165771..1166724 (+)
• Length: 317 a.a.
• NCBI ID: WP_014476425.1
• Uniprot ID: A0A0K6M9I2
• Organism: Bacillus subtilis strain HY2-62
• Function: regulation of regulators (predicted from homology) Competence regulation

Genomic Context

Location: 1160771..1171724

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LFL98_RS06010 (LFL98_06015)	argF	1162604..1163563 (+)	960	WP_088325579.1	ornithine carbamoyltransferase	-
LFL98_RS06015 (LFL98_06020)	yjzC	1163649..1163828 (+)	180	WP_003245356.1	YjzC family protein	-
LFL98_RS06020 (LFL98_06025)	yjzD	1163874..1164059 (-)	186	WP_003245236.1	DUF2929 domain-containing protein	-
LFL98_RS06025 (LFL98_06030)	-	1164308..1165042 (+)	735	WP_003245223.1	hypothetical protein	-
LFL98_RS06030 (LFL98_06035)	-	1165124..1165681 (+)	558	WP_015252365.1	hypothetical protein	-
LFL98_RS06035 (LFL98_06040)	med	1165771..1166724 (+)	954	WP_014476425.1	transcriptional regulator Med	Regulator
LFL98_RS06040 (LFL98_06045)	comZ	1166739..1166930 (+)	192	WP_003224559.1	ComG operon transcriptional repressor ComZ	Regulator
LFL98_RS06045 (LFL98_06050)	yjzB	1166960..1167199 (-)	240	WP_003232972.1	spore coat protein YjzB	-
LFL98_RS06050 (LFL98_06055)	fabH	1167364..1168302 (+)	939	WP_003232971.1	beta-ketoacyl-ACP synthase III	-
LFL98_RS06055 (LFL98_06060)	fabF	1168325..1169566 (+)	1242	WP_003244890.1	beta-ketoacyl-ACP synthase II	-
LFL98_RS06060 (LFL98_06065)	yjaZ	1169642..1170427 (+)	786	WP_277737058.1	DUF2268 domain-containing protein	-
LFL98_RS06065 (LFL98_06070)	appD	1170619..1171605 (+)	987	WP_003232965.1	oligopeptide ABC transporter ATP-binding protein AppD	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 35310.84 Da
• Isoelectric Point: 4.6031

>NTDB_id=754604 LFL98_RS06035 WP_014476425.1 1165771..1166724(+) (med) [Bacillus subtilis strain HY2-62]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide

• Length: 954 bp

>NTDB_id=754604 LFL98_RS06035 WP_014476425.1 1165771..1166724(+) (med) [Bacillus subtilis strain HY2-62]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGTACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACGAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATTGGTTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAATACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGACA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAATAA

Domains

Predicted by InterproScan.

• ABC transporter substrate-binding protein PnrA-like (Bmp) (27-317)

3D structure

• AlphaFold DB: A0A0K6M9I2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
med	Bacillus subtilis subsp. subtilis str. 168	99.685	100	0.997