Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PALA52_RS23395 Genome accession   NZ_CP110347
Coordinates   5069981..5070538 (+) Length   185 a.a.
NCBI ID   WP_058141282.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA52     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5064981..5075538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA52_RS23375 (PALA52_04641) pilR 5066258..5067595 (+) 1338 WP_024914651.1 two-component system response regulator PilR Regulator
  PALA52_RS23380 (PALA52_04642) thiO 5067640..5068734 (-) 1095 WP_024914650.1 glycine oxidase ThiO -
  PALA52_RS23385 (PALA52_04643) - 5068869..5069378 (+) 510 WP_058141281.1 GspH/FimT family pseudopilin -
  PALA52_RS23390 (PALA52_04644) - 5069484..5069990 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PALA52_RS23395 (PALA52_04645) pilV 5069981..5070538 (+) 558 WP_058141282.1 type 4a pilus minor pilin PilV Machinery gene
  PALA52_RS23400 (PALA52_04646) pilW 5070535..5071359 (+) 825 WP_058141283.1 type 4a pilus minor pilin PilW -
  PALA52_RS23405 (PALA52_04647) pilX 5071356..5071943 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PALA52_RS23410 (PALA52_04648) pilY1 5071955..5075440 (+) 3486 WP_024914646.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20033.10 Da        Isoelectric Point: 8.2255

>NTDB_id=754279 PALA52_RS23395 WP_058141282.1 5069981..5070538(+) (pilV) [Pseudomonas aeruginosa strain PALA52]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQAKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=754279 PALA52_RS23395 WP_058141282.1 5069981..5070538(+) (pilV) [Pseudomonas aeruginosa strain PALA52]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGATTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGCGAAGAACGAACTGCCAGGCGCTGGAGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCGATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.919

100

0.989