Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PALA52_RS09970 Genome accession   NZ_CP110347
Coordinates   2142849..2143484 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain PALA52     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2137849..2148484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA52_RS09955 (PALA52_01976) - 2138537..2139781 (+) 1245 WP_205587549.1 lipoprotein-releasing ABC transporter permease subunit -
  PALA52_RS09960 (PALA52_01977) - 2139887..2140420 (-) 534 WP_024917554.1 DUF2062 domain-containing protein -
  PALA52_RS09965 (PALA52_01978) comA 2140551..2142776 (+) 2226 WP_270125304.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PALA52_RS09970 (PALA52_01979) exbB 2142849..2143484 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PALA52_RS09975 (PALA52_01980) - 2143481..2143921 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  PALA52_RS09980 (PALA52_01981) lpxK 2143921..2144919 (+) 999 WP_058017665.1 tetraacyldisaccharide 4'-kinase -
  PALA52_RS09985 (PALA52_01982) - 2144957..2145142 (+) 186 WP_003091157.1 Trm112 family protein -
  PALA52_RS09990 (PALA52_01983) kdsB 2145142..2145906 (+) 765 WP_263957566.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PALA52_RS09995 (PALA52_01984) - 2145906..2146370 (+) 465 WP_121127976.1 low molecular weight protein-tyrosine-phosphatase -
  PALA52_RS10000 (PALA52_01985) murB 2146367..2147386 (+) 1020 WP_241286862.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=754263 PALA52_RS09970 WP_003091163.1 2142849..2143484(+) (exbB) [Pseudomonas aeruginosa strain PALA52]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=754263 PALA52_RS09970 WP_003091163.1 2142849..2143484(+) (exbB) [Pseudomonas aeruginosa strain PALA52]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATTCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCTGCGGGCATCTCCAAGGCCTTGATCACCACTGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCGATCAAACTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81