Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | HRR27_RS11765 | Genome accession | NZ_AP021889 |
| Coordinates | 2500754..2502001 (+) | Length | 415 a.a. |
| NCBI ID | WP_173274040.1 | Uniprot ID | - |
| Organism | Thiosulfatimonas sediminis strain aks77 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2495754..2507001
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HRR27_RS11750 (THMIRHAS_23150) | - | 2496070..2497815 (+) | 1746 | WP_173274037.1 | lysophospholipid acyltransferase family protein | - |
| HRR27_RS11755 (THMIRHAS_23160) | - | 2497878..2499212 (-) | 1335 | WP_173274038.1 | pitrilysin family protein | - |
| HRR27_RS11760 (THMIRHAS_23170) | - | 2499212..2500609 (-) | 1398 | WP_173274039.1 | pitrilysin family protein | - |
| HRR27_RS11765 (THMIRHAS_23180) | pilA | 2500754..2502001 (+) | 1248 | WP_173274040.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| HRR27_RS11770 (THMIRHAS_23190) | - | 2502013..2502819 (+) | 807 | WP_173274041.1 | DUF2914 domain-containing protein | - |
| HRR27_RS11775 (THMIRHAS_23200) | - | 2502806..2503396 (+) | 591 | WP_173274042.1 | hypothetical protein | - |
| HRR27_RS11780 (THMIRHAS_23210) | fabB | 2503494..2504714 (-) | 1221 | WP_173274043.1 | beta-ketoacyl-ACP synthase I | - |
| HRR27_RS11785 (THMIRHAS_23220) | fabA | 2504718..2505233 (-) | 516 | WP_173274044.1 | 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA | - |
| HRR27_RS11795 (THMIRHAS_23230) | - | 2505492..2506256 (-) | 765 | WP_173274045.1 | type III pantothenate kinase | - |
| HRR27_RS11800 (THMIRHAS_23240) | - | 2506253..2506996 (-) | 744 | WP_173274046.1 | biotin--[acetyl-CoA-carboxylase] ligase | - |
Sequence
Protein
Download Length: 415 a.a. Molecular weight: 45349.84 Da Isoelectric Point: 4.8830
>NTDB_id=75420 HRR27_RS11765 WP_173274040.1 2500754..2502001(+) (pilA) [Thiosulfatimonas sediminis strain aks77]
MFNFFRKKKNPPETEQPLETQTLSQAPEASEQPIVAERELPSSPPDKIDLPNQAVVPETVMVSEPQLPPLSEPTTPAIKP
VLEQESEPKAETEVDLDQPETKRGFFARLKAGLSKTRKSFTDSLSNLILGKKEIDDDLLDELEMILLTADVGIEATNRII
KNLTDQVSRKELKDPQALIDALKNQLQAILTPMSRPLEIDTFLQSNRGPYVILMVGINGVGKTTTIGKLAKRFQMEGKSV
MLAAGDTFRAAAVEQLQTWGERNDVTVISQKTGADSAAVIYDAVQSAKAKNIDVLIADTAGRLHTQSNLMEELKKVKRVI
AKVDASAPHEVMLVIDAGTGQNALNQTKQFHEAVGVSGITLTKLDGTAKGGIVYALAEQCQVPIRFIGVGEKIDDLRPFN
SKDFTAALFDQKAND
MFNFFRKKKNPPETEQPLETQTLSQAPEASEQPIVAERELPSSPPDKIDLPNQAVVPETVMVSEPQLPPLSEPTTPAIKP
VLEQESEPKAETEVDLDQPETKRGFFARLKAGLSKTRKSFTDSLSNLILGKKEIDDDLLDELEMILLTADVGIEATNRII
KNLTDQVSRKELKDPQALIDALKNQLQAILTPMSRPLEIDTFLQSNRGPYVILMVGINGVGKTTTIGKLAKRFQMEGKSV
MLAAGDTFRAAAVEQLQTWGERNDVTVISQKTGADSAAVIYDAVQSAKAKNIDVLIADTAGRLHTQSNLMEELKKVKRVI
AKVDASAPHEVMLVIDAGTGQNALNQTKQFHEAVGVSGITLTKLDGTAKGGIVYALAEQCQVPIRFIGVGEKIDDLRPFN
SKDFTAALFDQKAND
Nucleotide
Download Length: 1248 bp
>NTDB_id=75420 HRR27_RS11765 WP_173274040.1 2500754..2502001(+) (pilA) [Thiosulfatimonas sediminis strain aks77]
ATGTTTAACTTTTTCCGTAAAAAGAAAAACCCGCCTGAAACCGAACAGCCACTCGAGACACAAACGCTCAGCCAAGCGCC
AGAAGCCTCTGAGCAGCCGATTGTCGCAGAGCGCGAACTGCCATCAAGCCCGCCGGATAAAATAGACCTGCCAAACCAAG
CGGTCGTTCCAGAAACCGTGATGGTAAGCGAACCCCAGTTGCCGCCGCTTTCAGAACCAACGACACCAGCCATTAAGCCT
GTGTTGGAACAGGAGTCTGAACCGAAAGCCGAGACAGAGGTTGACCTAGACCAACCGGAAACCAAACGCGGCTTTTTTGC
GCGTTTAAAAGCGGGCTTAAGCAAAACTCGGAAGAGTTTTACCGACAGTCTTAGTAATTTGATTCTCGGCAAAAAAGAGA
TTGATGATGACCTTCTCGATGAGTTAGAAATGATTCTGTTGACCGCTGATGTAGGTATTGAAGCGACTAATCGAATTATC
AAAAACTTGACTGACCAAGTCTCACGCAAAGAATTGAAAGACCCGCAAGCGTTGATTGATGCACTTAAAAATCAGCTACA
GGCGATTCTTACTCCAATGAGCCGTCCATTAGAGATAGACACGTTTCTACAAAGCAACCGTGGGCCTTATGTGATTTTAA
TGGTTGGTATCAATGGGGTTGGCAAAACAACCACCATCGGCAAGTTAGCAAAACGCTTTCAGATGGAAGGAAAATCGGTG
ATGCTGGCTGCTGGGGATACTTTTCGAGCCGCCGCGGTCGAACAACTACAAACGTGGGGAGAGCGTAACGATGTGACGGT
TATCTCGCAAAAAACCGGCGCTGATTCCGCTGCCGTTATTTATGACGCGGTGCAATCCGCCAAAGCGAAAAATATTGATG
TGTTGATTGCCGATACAGCCGGGCGTTTACACACGCAATCAAACTTAATGGAAGAGTTGAAAAAAGTGAAACGCGTGATT
GCGAAAGTCGATGCCAGCGCGCCACACGAAGTCATGCTGGTGATTGATGCCGGAACAGGTCAGAACGCACTAAATCAAAC
GAAGCAATTCCATGAAGCGGTTGGCGTCAGCGGCATTACCTTAACCAAACTGGACGGGACTGCAAAAGGCGGCATCGTTT
ATGCTTTGGCCGAGCAGTGCCAAGTGCCAATTCGTTTTATTGGCGTTGGTGAAAAAATTGATGATTTACGACCATTCAAT
AGCAAAGACTTTACTGCCGCTCTGTTTGACCAAAAGGCAAACGACTAA
ATGTTTAACTTTTTCCGTAAAAAGAAAAACCCGCCTGAAACCGAACAGCCACTCGAGACACAAACGCTCAGCCAAGCGCC
AGAAGCCTCTGAGCAGCCGATTGTCGCAGAGCGCGAACTGCCATCAAGCCCGCCGGATAAAATAGACCTGCCAAACCAAG
CGGTCGTTCCAGAAACCGTGATGGTAAGCGAACCCCAGTTGCCGCCGCTTTCAGAACCAACGACACCAGCCATTAAGCCT
GTGTTGGAACAGGAGTCTGAACCGAAAGCCGAGACAGAGGTTGACCTAGACCAACCGGAAACCAAACGCGGCTTTTTTGC
GCGTTTAAAAGCGGGCTTAAGCAAAACTCGGAAGAGTTTTACCGACAGTCTTAGTAATTTGATTCTCGGCAAAAAAGAGA
TTGATGATGACCTTCTCGATGAGTTAGAAATGATTCTGTTGACCGCTGATGTAGGTATTGAAGCGACTAATCGAATTATC
AAAAACTTGACTGACCAAGTCTCACGCAAAGAATTGAAAGACCCGCAAGCGTTGATTGATGCACTTAAAAATCAGCTACA
GGCGATTCTTACTCCAATGAGCCGTCCATTAGAGATAGACACGTTTCTACAAAGCAACCGTGGGCCTTATGTGATTTTAA
TGGTTGGTATCAATGGGGTTGGCAAAACAACCACCATCGGCAAGTTAGCAAAACGCTTTCAGATGGAAGGAAAATCGGTG
ATGCTGGCTGCTGGGGATACTTTTCGAGCCGCCGCGGTCGAACAACTACAAACGTGGGGAGAGCGTAACGATGTGACGGT
TATCTCGCAAAAAACCGGCGCTGATTCCGCTGCCGTTATTTATGACGCGGTGCAATCCGCCAAAGCGAAAAATATTGATG
TGTTGATTGCCGATACAGCCGGGCGTTTACACACGCAATCAAACTTAATGGAAGAGTTGAAAAAAGTGAAACGCGTGATT
GCGAAAGTCGATGCCAGCGCGCCACACGAAGTCATGCTGGTGATTGATGCCGGAACAGGTCAGAACGCACTAAATCAAAC
GAAGCAATTCCATGAAGCGGTTGGCGTCAGCGGCATTACCTTAACCAAACTGGACGGGACTGCAAAAGGCGGCATCGTTT
ATGCTTTGGCCGAGCAGTGCCAAGTGCCAATTCGTTTTATTGGCGTTGGTGAAAAAATTGATGATTTACGACCATTCAAT
AGCAAAGACTTTACTGCCGCTCTGTTTGACCAAAAGGCAAACGACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
47.991 |
100 |
0.489 |