Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   OM992_RS18625 Genome accession   NZ_CP110268
Coordinates   3593686..3594375 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus siamensis strain YB-1631     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3588686..3599375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM992_RS18590 (OM992_18590) - 3588886..3589368 (-) 483 WP_016937774.1 flagellar protein FlgN -
  OM992_RS18595 (OM992_18595) flgM 3589383..3589649 (-) 267 WP_016937773.1 flagellar biosynthesis anti-sigma factor FlgM -
  OM992_RS18600 (OM992_18600) - 3589719..3590138 (-) 420 WP_016937772.1 TIGR03826 family flagellar region protein -
  OM992_RS18605 (OM992_18605) comFC 3590212..3590901 (-) 690 WP_197083943.1 phosphoribosyltransferase family protein Machinery gene
  OM992_RS18610 (OM992_18610) - 3590905..3591189 (-) 285 WP_016937770.1 late competence development ComFB family protein -
  OM992_RS18615 (OM992_18615) comFA 3591247..3592632 (-) 1386 WP_264819227.1 DEAD/DEAH box helicase Machinery gene
  OM992_RS18620 (OM992_18620) - 3592740..3593588 (-) 849 WP_264819228.1 DegV family protein -
  OM992_RS18625 (OM992_18625) degU 3593686..3594375 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  OM992_RS18630 (OM992_18630) degS 3594452..3595615 (-) 1164 WP_013353787.1 two-component sensor histidine kinase DegS Regulator
  OM992_RS18635 (OM992_18635) - 3595838..3596485 (+) 648 WP_007614107.1 YigZ family protein -
  OM992_RS18640 (OM992_18640) - 3596490..3597722 (+) 1233 WP_264819229.1 LCP family protein -
  OM992_RS18645 (OM992_18645) - 3597821..3598897 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=753695 OM992_RS18625 WP_003219701.1 3593686..3594375(-) (degU) [Bacillus siamensis strain YB-1631]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=753695 OM992_RS18625 WP_003219701.1 3593686..3594375(-) (degU) [Bacillus siamensis strain YB-1631]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAAGCGGCTCGTATCGTCGAGCATTATCATCCCGATGTCGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACCCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCGGATACTTTAATTGAGGCAGTGAAAGTGGTAGCCGAAGGCGGTTCGTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGGCGTCTTGCGACAAGCGGAGTTTCCGCTCATCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAACGACCGGA
CGCAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1