Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   OM992_RS18615 Genome accession   NZ_CP110268
Coordinates   3591247..3592632 (-) Length   461 a.a.
NCBI ID   WP_264819227.1    Uniprot ID   -
Organism   Bacillus siamensis strain YB-1631     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3586247..3597632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM992_RS18580 (OM992_18580) flgL 3586423..3587340 (-) 918 WP_016937776.1 flagellar hook-associated protein FlgL -
  OM992_RS18585 (OM992_18585) flgK 3587353..3588870 (-) 1518 WP_016937775.1 flagellar hook-associated protein FlgK -
  OM992_RS18590 (OM992_18590) - 3588886..3589368 (-) 483 WP_016937774.1 flagellar protein FlgN -
  OM992_RS18595 (OM992_18595) flgM 3589383..3589649 (-) 267 WP_016937773.1 flagellar biosynthesis anti-sigma factor FlgM -
  OM992_RS18600 (OM992_18600) - 3589719..3590138 (-) 420 WP_016937772.1 TIGR03826 family flagellar region protein -
  OM992_RS18605 (OM992_18605) comFC 3590212..3590901 (-) 690 WP_197083943.1 phosphoribosyltransferase family protein Machinery gene
  OM992_RS18610 (OM992_18610) - 3590905..3591189 (-) 285 WP_016937770.1 late competence development ComFB family protein -
  OM992_RS18615 (OM992_18615) comFA 3591247..3592632 (-) 1386 WP_264819227.1 DEAD/DEAH box helicase Machinery gene
  OM992_RS18620 (OM992_18620) - 3592740..3593588 (-) 849 WP_264819228.1 DegV family protein -
  OM992_RS18625 (OM992_18625) degU 3593686..3594375 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  OM992_RS18630 (OM992_18630) degS 3594452..3595615 (-) 1164 WP_013353787.1 two-component sensor histidine kinase DegS Regulator
  OM992_RS18635 (OM992_18635) - 3595838..3596485 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52353.63 Da        Isoelectric Point: 9.9672

>NTDB_id=753694 OM992_RS18615 WP_264819227.1 3591247..3592632(-) (comFA) [Bacillus siamensis strain YB-1631]
MSEDASKFSEVRDFFYGRHLLRSEIPFSDQRISPFIDKEYITAEPSVIRRKNRFVCRRCGQSDQSCFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSCNQAPENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFENVEVSALYGGSEDKGSLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKNNSALVYVTATPSDALKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLEKGKLPHSVTDWV
RQKLQSRLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=753694 OM992_RS18615 WP_264819227.1 3591247..3592632(-) (comFA) [Bacillus siamensis strain YB-1631]
ATGTCCGAAGATGCTTCAAAATTTTCAGAGGTGCGGGATTTCTTTTACGGCAGGCATTTGTTGAGATCTGAGATACCGTT
TTCAGATCAGCGTATCAGTCCTTTTATAGACAAAGAATATATAACGGCCGAGCCGTCTGTCATCCGCAGGAAAAACCGTT
TCGTCTGCCGCCGATGCGGCCAGTCTGACCAATCCTGCTTTGCCGCATTCTGGGCGCCTTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGTAATCAAGCCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTCTGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATAGAGTTT
GCACTGAATCACGGATTGCGGGTCTGTGTCGCGACTCCGCGTACAGATGTTGTGCTTGAACTTCTGCCGAGACTGAAAAA
AGCATTTGAGAATGTTGAAGTTTCAGCTCTGTACGGCGGCAGTGAAGACAAAGGCAGTTTAACTCCGCTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTATCGGGACATTTTTGATGTCATGATAATAGATGAAGTGGATGCATTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCGGTTGATAAAGCTAGAAAGAACAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CGCATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGAAAACCTCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTGAGAAAGGAAAACTGCCACACTCAGTAACGGATTGGGTC
CGTCAAAAACTTCAATCACGGCTGCCTGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACGTAAGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGATCTGCTGGTAACAACTACGATTTTAGAAAGAGGAGTTACCGTACCTAAAGTTCAGACATGTGTCCTCGGC
GCGGAAGCACCTATCTTTACTGAGAGCGCACTCGTGCAGATCGCAGGCAGAACGGGAAGGCACTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(329-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

61.739

99.783

0.616