Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   OM992_RS13420 Genome accession   NZ_CP110268
Coordinates   2615234..2617585 (-) Length   783 a.a.
NCBI ID   WP_264818853.1    Uniprot ID   -
Organism   Bacillus siamensis strain YB-1631     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2610234..2622585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM992_RS13385 (OM992_13385) - 2610596..2610934 (-) 339 WP_016938900.1 YqxA family protein -
  OM992_RS13390 (OM992_13390) spoIIP 2610951..2612144 (-) 1194 WP_264818851.1 stage II sporulation protein P -
  OM992_RS13395 (OM992_13395) gpr 2612212..2613318 (-) 1107 WP_264818852.1 GPR endopeptidase -
  OM992_RS13400 (OM992_13400) rpsT 2613521..2613787 (+) 267 WP_003152876.1 30S ribosomal protein S20 -
  OM992_RS13405 (OM992_13405) holA 2613811..2614846 (-) 1036 Protein_2590 DNA polymerase III subunit delta -
  OM992_RS13410 (OM992_13410) - 2614886..2615040 (-) 155 Protein_2591 hypothetical protein -
  OM992_RS13415 (OM992_13415) - 2615081..2615215 (+) 135 WP_003152870.1 YqzM family protein -
  OM992_RS13420 (OM992_13420) comEC 2615234..2617585 (-) 2352 WP_264818853.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OM992_RS13425 (OM992_13425) - 2617586..2618155 (-) 570 WP_047475594.1 ComE operon protein 2 -
  OM992_RS13430 (OM992_13430) comEA 2618221..2618835 (-) 615 WP_264818854.1 helix-hairpin-helix domain-containing protein Machinery gene
  OM992_RS13435 (OM992_13435) comER 2618893..2619714 (+) 822 WP_264818855.1 late competence protein ComER -
  OM992_RS13440 (OM992_13440) - 2619783..2620520 (-) 738 WP_064777738.1 class I SAM-dependent methyltransferase -
  OM992_RS13445 (OM992_13445) rsfS 2620517..2620873 (-) 357 WP_016938891.1 ribosome silencing factor -
  OM992_RS13450 (OM992_13450) yqeK 2620890..2621450 (-) 561 WP_045926758.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  OM992_RS13455 (OM992_13455) - 2621440..2622009 (-) 570 WP_016938889.1 nicotinate-nucleotide adenylyltransferase -
  OM992_RS13460 (OM992_13460) yhbY 2622020..2622310 (-) 291 WP_064777737.1 ribosome assembly RNA-binding protein YhbY -

Sequence

Protein


Download         Length: 783 a.a.        Molecular weight: 87161.06 Da        Isoelectric Point: 9.2811

>NTDB_id=753675 OM992_RS13420 WP_264818853.1 2615234..2617585(-) (comEC) [Bacillus siamensis strain YB-1631]
MKYKYLLLPLAAVSATAGIAAANFFWVLFFFLLYLLFIFVKTKQYTSFIVSLISFCLYFFLYTVYDAANVSRYQAGSYTE
QAVITNIPKVDGAKMSAVIRTHDKEKWAASYKIRSLEEKGLIEQLEPGMRCVFTGSLEQPGHATSPGGFDYKEYLNSQHI
HWLFSVTSIQQCKKSGMPLYKLLNIRKNLISIIQNHVPESSAGIVEALTLGERFSIEDDILNAYQNLGVVHLMAISGMHV
GLITAGIFYVLIRIGLTREKAGVLLLFFLPVYTLLSGAAPSVLRASLMLGFYIAGTLFKRSIHSSAALSVSYLLLLMFNP
YLLWQAGFQLSFAVSAALILSSSILKKAGKRRLAGLAMASFIAELSSLPFLLYHFQQISLVSFPMNMVMVPFYTLFVIPF
SVIGFLLLLLSRQMGECLFYMFDLVMKPVHDFMTYAASVDLFTMIVSKPDFLSLLLLAVSVFTLFAALEKGSFLKLRKSP
LFFCAVLVYLMFRPYFSPWGEADMLDIGQGDSLFISAPHRKGTVMVDTGGVVAYPGESWKEKRHPYSIGEKVLIPFLNGK
GVKKLDALILTHADQDHIGEAGVLIKKHRVKRLIVPVGFVKEPKDQDILKMAKENNIPVVEAKRGDTITAGNLQFQVLSP
ESSDVKSKNDSSLVLWTVLGGVSWLLTGDLESDGETEVLKAYPNLKADILKAGHHGSKSSTSEAFLKQLQPEAALISAGE
DNRYHHPHEEVLDRLKAYSVNVLRTDLSGTIQYRFKKGAGTFSVFPPYDIEETRAQEVKKTAD

Nucleotide


Download         Length: 2352 bp        

>NTDB_id=753675 OM992_RS13420 WP_264818853.1 2615234..2617585(-) (comEC) [Bacillus siamensis strain YB-1631]
ATGAAATATAAATACCTTCTTCTGCCTCTGGCGGCGGTTTCTGCAACCGCGGGAATTGCCGCCGCAAATTTCTTCTGGGT
TCTATTCTTTTTCCTTCTGTATCTTCTCTTTATTTTTGTGAAAACAAAGCAGTACACATCGTTTATCGTCAGCCTCATTT
CTTTTTGTCTTTATTTCTTTCTGTATACGGTTTATGACGCTGCGAATGTATCCCGGTATCAGGCCGGGAGCTATACTGAA
CAGGCCGTCATCACAAATATTCCGAAGGTTGACGGGGCGAAAATGTCAGCCGTTATCCGAACTCATGACAAAGAAAAATG
GGCCGCTTCATACAAAATCCGGTCTCTTGAAGAAAAAGGTCTCATTGAACAGCTGGAACCGGGGATGCGCTGCGTGTTTA
CCGGCTCTTTGGAACAGCCCGGACATGCGACGTCTCCCGGAGGTTTTGATTATAAGGAATATCTTAATTCTCAGCATATT
CACTGGTTATTTTCCGTGACTTCCATTCAGCAGTGTAAAAAATCCGGCATGCCGCTGTATAAACTGTTGAACATCAGAAA
GAATTTGATTTCGATCATTCAAAATCACGTGCCTGAATCCTCTGCCGGAATTGTCGAAGCGCTGACCTTGGGTGAAAGAT
TTTCTATAGAGGACGATATACTGAACGCTTATCAAAATTTGGGAGTCGTTCATTTAATGGCCATTTCCGGAATGCATGTC
GGTCTGATTACCGCAGGAATATTTTATGTTCTGATCAGAATCGGGCTGACAAGAGAAAAGGCTGGGGTTTTACTGCTGTT
TTTTTTACCGGTGTATACGCTGTTAAGCGGTGCGGCCCCATCCGTATTGCGCGCATCCCTCATGCTGGGTTTTTATATCG
CCGGAACTCTTTTTAAACGCAGTATTCATTCTTCGGCTGCATTGTCCGTGTCTTATCTGCTGCTCCTCATGTTTAATCCT
TACCTCCTTTGGCAGGCGGGCTTCCAGCTTTCTTTTGCGGTAAGCGCCGCTTTAATTCTGTCATCCTCCATTTTAAAGAA
AGCAGGGAAAAGAAGACTTGCCGGGCTTGCGATGGCCTCATTCATTGCGGAGCTCAGTTCGCTTCCGTTTCTGCTCTATC
ATTTTCAGCAGATTTCGCTTGTGAGTTTTCCGATGAATATGGTGATGGTGCCTTTTTATACGTTATTTGTCATTCCGTTT
TCGGTCATCGGTTTCCTTCTTCTCTTACTTTCAAGGCAGATGGGGGAATGTTTGTTTTATATGTTTGACCTTGTGATGAA
GCCTGTGCATGATTTCATGACATATGCGGCATCCGTTGATTTATTTACAATGATTGTGTCAAAGCCTGACTTTCTTTCCC
TTCTTCTGCTTGCGGTTTCCGTGTTTACGCTTTTTGCAGCTTTGGAAAAAGGGAGTTTTTTGAAACTCAGAAAATCGCCT
CTTTTTTTCTGCGCGGTTTTGGTTTATTTAATGTTCCGTCCTTATTTCAGTCCATGGGGAGAAGCGGATATGCTTGATAT
CGGGCAGGGAGACTCGCTGTTTATAAGTGCGCCGCACCGCAAAGGAACCGTAATGGTTGATACAGGGGGAGTGGTGGCTT
ATCCGGGAGAATCATGGAAAGAAAAACGCCACCCGTATTCTATCGGTGAGAAGGTTTTGATTCCGTTTTTGAACGGAAAA
GGGGTGAAAAAGCTGGATGCGCTGATTTTAACCCATGCGGATCAGGATCATATCGGGGAAGCCGGAGTATTAATCAAAAA
ACATAGAGTCAAACGGTTGATTGTTCCCGTGGGGTTCGTGAAGGAACCGAAGGATCAGGACATATTGAAGATGGCGAAAG
AAAACAACATTCCCGTTGTCGAAGCAAAGCGGGGCGACACCATTACAGCCGGTAATCTTCAATTTCAGGTGCTGTCCCCG
GAGTCGTCTGACGTAAAGAGTAAAAATGATTCGTCACTGGTGCTTTGGACGGTTTTAGGCGGAGTGAGCTGGCTTTTGAC
GGGAGATTTAGAATCGGACGGCGAAACGGAAGTGCTGAAAGCGTATCCGAATCTGAAGGCTGATATATTGAAGGCCGGTC
ATCACGGGAGCAAAAGCTCTACGAGTGAAGCTTTTTTGAAACAGCTTCAGCCGGAAGCAGCACTGATTTCAGCAGGTGAA
GATAATCGTTACCATCATCCGCATGAAGAGGTGCTGGATCGTTTGAAAGCGTACTCTGTCAATGTACTTCGCACCGATCT
CAGCGGAACGATTCAATACAGATTTAAAAAAGGCGCCGGAACGTTTTCTGTCTTTCCTCCATATGATATAGAAGAAACCA
GGGCACAGGAAGTAAAAAAGACTGCCGATTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(25-171)

Metallo-beta-lactamase superfamily (Lactamase_B)

(508-719)

Competence protein (Competence)

(208-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Bacillus subtilis subsp. subtilis str. 168

55.959

98.595

0.552