Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OM992_RS08620 Genome accession   NZ_CP110268
Coordinates   1626255..1627154 (+) Length   299 a.a.
NCBI ID   WP_264820128.1    Uniprot ID   -
Organism   Bacillus siamensis strain YB-1631     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1621255..1632154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM992_RS08600 (OM992_08600) - 1621946..1623649 (+) 1704 WP_264820127.1 glycosyl transferase -
  OM992_RS08605 (OM992_08605) - 1623646..1623927 (+) 282 WP_016936135.1 FlhB-like flagellar biosynthesis protein -
  OM992_RS08610 (OM992_08610) sucC 1624102..1625259 (+) 1158 WP_016936134.1 ADP-forming succinate--CoA ligase subunit beta -
  OM992_RS08615 (OM992_08615) sucD 1625288..1626190 (+) 903 WP_016936133.1 succinate--CoA ligase subunit alpha -
  OM992_RS08620 (OM992_08620) dprA 1626255..1627154 (+) 900 WP_264820128.1 DNA-processing protein DprA Machinery gene
  OM992_RS08625 (OM992_08625) topA 1627336..1629411 (+) 2076 WP_264820129.1 type I DNA topoisomerase -
  OM992_RS08630 (OM992_08630) trmFO 1629476..1630783 (+) 1308 WP_016936130.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  OM992_RS08635 (OM992_08635) xerC 1630853..1631770 (+) 918 WP_047475018.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32930.10 Da        Isoelectric Point: 8.9548

>NTDB_id=753659 OM992_RS08620 WP_264820128.1 1626255..1627154(+) (dprA) [Bacillus siamensis strain YB-1631]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLRDPHPLTVLSEGKTAPKAIFREIERKDPELDEVLSEYRREGITVI
PISSSRYPSWLKTIYDPPVVLFAKGNTQLLEKGRKIGIVGTRKPTEDGIKAVGHLTAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYIAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARGVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=753659 OM992_RS08620 WP_264820128.1 1626255..1627154(+) (dprA) [Bacillus siamensis strain YB-1631]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATCAATCAAATTATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCCCTGTCTTTTTTACGGGACCCGCATCCATTAACTGTTTTGTCAGAAGGGAAAACAGCACCGAAAGCCA
TTTTTCGAGAAATAGAGCGCAAGGATCCGGAACTCGATGAAGTTCTGTCCGAATACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCTTCATGGCTTAAAACGATTTATGATCCGCCCGTCGTCTTGTTTGCAAAAGGGAATAC
GCAGCTTCTTGAAAAAGGCCGAAAAATTGGGATTGTGGGCACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTACCGCCGAACTCTCAAAAAAAGGCTGGGTCATCGTAAGCGGGCTTGCATCCGGCATAGACGGATTGTCTCATAAG
GCGAGCATCAGAGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATTTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATAGCTGAACACCACCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAGTGGCACTTTC
CGATGAGAAACCGTATAATCAGCGGATTAAGTGAAGGAATTGTAGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTATCAGGCCCTCGATCAAGGGAGAGAGGTATTTGCAGTTCCCGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCAAAAGCTGTATTGTGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGAGGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.903

100

0.709
  dprA Lactococcus lactis subsp. cremoris KW2

41.577

93.311

0.388
  dprA Streptococcus mutans UA159

43.726

87.96

0.385