Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   OCX48_RS06400 Genome accession   NZ_AP024736
Coordinates   1310585..1311736 (+) Length   383 a.a.
NCBI ID   WP_113556006.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 59709     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1305585..1316736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCX48_RS06375 yfmH 1306413..1307699 (+) 1287 WP_000664780.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  OCX48_RS06380 ymfI 1307699..1308403 (+) 705 WP_000646231.1 elongation factor P 5-aminopentanone reductase -
  OCX48_RS06385 - 1308508..1309335 (+) 828 WP_000214890.1 YmfK family protein -
  OCX48_RS06390 - 1309354..1309746 (+) 393 WP_000859443.1 helix-turn-helix domain-containing protein -
  OCX48_RS06395 pgsA 1309780..1310358 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OCX48_RS06400 cinA 1310585..1311736 (+) 1152 WP_113556006.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  OCX48_RS06405 recA 1311901..1312944 (+) 1044 WP_000368166.1 recombinase RecA Machinery gene
  OCX48_RS06410 rny 1313298..1314857 (+) 1560 WP_001050913.1 ribonuclease Y -
  OCX48_RS06415 - 1315154..1315369 (-) 216 WP_000026308.1 hypothetical protein -
  OCX48_RS06420 - 1315543..1316340 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43295.60 Da        Isoelectric Point: 6.1914

>NTDB_id=75364 OCX48_RS06400 WP_113556006.1 1310585..1311736(+) (cinA) [Staphylococcus aureus strain 59709]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLTNHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNFEFKTEQFKMSKSRNLLKNRSQNYVLIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=75364 OCX48_RS06400 WP_113556006.1 1310585..1311736(+) (cinA) [Staphylococcus aureus strain 59709]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGCTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAACAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTG
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAATATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCGGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTGTTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
TGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGTGCTCATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.146

100

0.431


Multiple sequence alignment