Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   OMJ04_RS17030 Genome accession   NZ_CP110263
Coordinates   3568311..3569396 (-) Length   361 a.a.
NCBI ID   WP_370026871.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain HMB20428     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3563311..3574396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMJ04_RS16990 (OMJ04_16990) - 3564179..3564976 (+) 798 WP_048688306.1 YqhG family protein -
  OMJ04_RS16995 (OMJ04_16995) - 3565021..3565206 (-) 186 WP_048688303.1 YqzE family protein -
  OMJ04_RS17000 (OMJ04_17000) comGG 3565322..3565678 (-) 357 WP_162604400.1 competence type IV pilus minor pilin ComGG -
  OMJ04_RS17005 (OMJ04_17005) comGF 3565701..3566180 (-) 480 WP_084786101.1 competence type IV pilus minor pilin ComGF -
  OMJ04_RS17010 (OMJ04_17010) - 3566128..3566466 (-) 339 WP_264895127.1 hypothetical protein -
  OMJ04_RS17015 (OMJ04_17015) comGD 3566453..3566896 (-) 444 WP_054400215.1 competence type IV pilus minor pilin ComGD -
  OMJ04_RS17020 (OMJ04_17020) comGC 3566904..3567215 (-) 312 WP_034308384.1 competence type IV pilus major pilin ComGC -
  OMJ04_RS17025 (OMJ04_17025) comGB 3567293..3568327 (-) 1035 WP_264895128.1 competence type IV pilus assembly protein ComGB -
  OMJ04_RS17030 (OMJ04_17030) comGA 3568311..3569396 (-) 1086 WP_370026871.1 competence type IV pilus ATPase ComGA Machinery gene
  OMJ04_RS17035 (OMJ04_17035) - 3569491..3569871 (-) 381 WP_264895129.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  OMJ04_RS17040 (OMJ04_17040) - 3570087..3570788 (+) 702 WP_264895130.1 metalloregulator ArsR/SmtB family transcription factor -
  OMJ04_RS17045 (OMJ04_17045) - 3570874..3571116 (+) 243 WP_034308393.1 DUF2626 domain-containing protein -
  OMJ04_RS17050 (OMJ04_17050) - 3571169..3572269 (-) 1101 WP_264895131.1 class I SAM-dependent methyltransferase -
  OMJ04_RS17055 (OMJ04_17055) - 3572583..3573209 (-) 627 WP_264895132.1 MBL fold metallo-hydrolase -
  OMJ04_RS17060 (OMJ04_17060) - 3573443..3573616 (+) 174 WP_034308396.1 DUF2759 domain-containing protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 40184.83 Da        Isoelectric Point: 8.1795

>NTDB_id=753494 OMJ04_RS17030 WP_370026871.1 3568311..3569396(-) (comGA) [Peribacillus frigoritolerans strain HMB20428]
MNELISIEKTAEKILTRAIVESASDIHIFFRGEGPHIQFRIDNKLVPQETLSFFEAERLIAHLKFLASMDIGEKRRPQSG
AITINLANQVVGLRLSTLPTAHLESLVIRLIPQQNILPLEQLSLFPNTVQKLIALLKHSHGMLIFTGPTGSGKTTTLYSL
LHHAHEMINRNIITLEDPIENVSEKVLQVQINEKAGITYSVGLKAVLRHDPDVIMVGEVRDAETAKIAVRAALTGHLILT
TMHTRDAQGAISRLLEFGVSLLEVEQTLIGVTAQRLVELRCLPCKGDCALACKMTARNKRASVYELLYGKSLAEVLRIMG
DEKGKATVSYRQLKDEIGKAVAMGYVESQEYERLVYHETKK

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=753494 OMJ04_RS17030 WP_370026871.1 3568311..3569396(-) (comGA) [Peribacillus frigoritolerans strain HMB20428]
ATGAATGAATTGATATCGATTGAAAAGACCGCAGAAAAAATACTAACCCGTGCCATCGTGGAATCGGCATCGGATATCCA
CATTTTTTTTCGCGGAGAGGGACCTCACATCCAATTCAGGATAGACAATAAGCTTGTTCCCCAGGAAACATTGTCATTCT
TTGAAGCTGAAAGGCTGATCGCTCATTTGAAGTTCCTTGCCTCGATGGATATAGGGGAGAAAAGGAGGCCCCAGAGTGGT
GCCATCACCATCAATTTGGCTAACCAGGTGGTCGGACTCCGCCTTTCCACTTTACCCACTGCCCATCTCGAAAGTTTGGT
CATCCGCTTAATACCCCAACAGAATATCCTTCCTCTAGAACAGTTATCCTTATTTCCAAACACCGTTCAAAAATTGATTG
CACTCCTGAAGCATTCCCATGGCATGCTCATATTTACCGGCCCGACCGGCAGTGGGAAAACCACGACACTATATTCCCTG
CTTCACCACGCCCATGAGATGATCAATCGAAATATCATTACACTTGAAGATCCCATTGAAAATGTATCCGAAAAGGTATT
GCAAGTCCAAATCAATGAAAAGGCGGGCATTACGTATTCAGTCGGCCTAAAAGCTGTTCTGAGGCATGACCCGGACGTGA
TCATGGTTGGGGAAGTCAGGGATGCAGAAACTGCCAAAATCGCGGTCCGTGCCGCATTAACCGGTCATCTGATACTAACG
ACCATGCATACGAGGGACGCCCAAGGCGCCATCTCCAGATTACTGGAATTTGGTGTCAGCTTACTTGAGGTTGAACAGAC
TTTGATTGGCGTGACAGCGCAGCGGCTGGTTGAATTGCGATGTCTTCCGTGTAAAGGGGACTGTGCTTTAGCTTGCAAAA
TGACTGCAAGGAATAAAAGGGCAAGTGTATATGAATTGCTATATGGAAAAAGTCTGGCTGAAGTTCTCCGGATAATGGGA
GATGAAAAAGGAAAGGCAACGGTCAGCTACCGCCAATTAAAGGATGAAATCGGAAAAGCGGTTGCGATGGGCTATGTGGA
ATCTCAGGAATATGAACGGCTGGTATACCATGAAACCAAAAAGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(13-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

56.056

98.338

0.551
  pilB Haemophilus influenzae 86-028NP

38.218

96.399

0.368