Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   UKS_RS01780 Genome accession   NZ_AP021887
Coordinates   348888..349619 (+) Length   243 a.a.
NCBI ID   WP_000889954.1    Uniprot ID   F9HLZ7
Organism   Streptococcus sp. 116-D4     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 343888..354619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UKS_RS01760 (UKS_03190) dnaK 344192..346015 (+) 1824 WP_049496358.1 molecular chaperone DnaK -
  UKS_RS01765 (UKS_03200) dnaJ 346490..347626 (+) 1137 WP_156011561.1 molecular chaperone DnaJ -
  UKS_RS01770 (UKS_03210) - 348113..348400 (-) 288 WP_156011563.1 hypothetical protein -
  UKS_RS01775 (UKS_03220) - 348410..348820 (-) 411 WP_001278317.1 HIT family protein -
  UKS_RS01780 (UKS_03230) pptA 348888..349619 (+) 732 WP_000889954.1 ABC transporter ATP-binding protein Regulator
  UKS_RS01785 (UKS_03240) - 349616..350665 (+) 1050 WP_156011565.1 ABC transporter permease -
  UKS_RS01790 (UKS_03250) - 350728..351057 (-) 330 WP_156011567.1 helicase BlpT -
  UKS_RS01795 (UKS_03260) - 351333..351671 (+) 339 WP_033684769.1 LytTR family DNA-binding domain-containing protein -
  UKS_RS01800 (UKS_03270) comE/blpR 351676..352422 (+) 747 WP_064276246.1 response regulator transcription factor Regulator
  UKS_RS01805 - 352427..353767 (+) 1341 WP_156011569.1 sensor histidine kinase -
  UKS_RS01810 (UKS_03290) blpC 353811..353966 (-) 156 WP_064276248.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27098.58 Da        Isoelectric Point: 4.6989

>NTDB_id=75339 UKS_RS01780 WP_000889954.1 348888..349619(+) (pptA) [Streptococcus sp. 116-D4]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLTPYSGSININGLTLQEDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFDRVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAIADLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EEL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=75339 UKS_RS01780 WP_000889954.1 348888..349619(+) (pptA) [Streptococcus sp. 116-D4]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTCTTGAAAGATGTGTCCTTTACCGTTGAAAGTGG
GCAGTTAGTCGGTTTGATTGGCCTCAATGGTGCTGGGAAATCAACGACTATTAATGAGATTATCGGTCTGTTGACACCTT
ATAGTGGCTCCATCAATATCAATGGACTTACTCTTCAAGAAGATGCAACTAGCTACCGCAAGCAAATTGGCTACATTCCT
GAGACACCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTATGGTATTGAGCAGAA
AGTGGCTTTTGATCGAGTAGAGCCCTTGTTAAAAATGTTCCGTCTGGACCAGAAATTGGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAAAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTGGATCCGTTGGCTATTGCAGACTTGATTCAGCTTTTGGAAGTGGAAAAGCAAAAGGGCAAGTCCATTCTCAT
GAGTACTCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTCCACAAGGGTGAGGTGCGTGCTAAGG
GAAATCTCCTGCAACTGCGCGAAGCCTTTGACATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGAGCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9HLZ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712

Multiple sequence alignment