Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   OKW95_RS10525 Genome accession   NZ_CP110254
Coordinates   2250881..2251261 (-) Length   126 a.a.
NCBI ID   WP_004792732.1    Uniprot ID   A0A372BPC4
Organism   Acinetobacter oleivorans strain S4     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2245881..2256261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW95_RS10495 (OKW95_10495) tadA 2245885..2246388 (-) 504 WP_005304734.1 tRNA adenosine(34) deaminase TadA -
  OKW95_RS10500 (OKW95_10500) - 2246394..2247518 (-) 1125 WP_013198077.1 enoyl-CoA hydratase/isomerase family protein -
  OKW95_RS10505 (OKW95_10505) ung 2247515..2248228 (-) 714 WP_005304723.1 uracil-DNA glycosylase -
  OKW95_RS10510 (OKW95_10510) - 2248282..2248878 (-) 597 WP_013198078.1 6-pyruvoyl trahydropterin synthase family protein -
  OKW95_RS10515 (OKW95_10515) gspK 2249107..2250066 (-) 960 WP_013198079.1 type II secretion system minor pseudopilin GspK -
  OKW95_RS10520 (OKW95_10520) xcpW 2250066..2250881 (-) 816 WP_013198080.1 type II secretion system minor pseudopilin GspJ Machinery gene
  OKW95_RS10525 (OKW95_10525) xcpV 2250881..2251261 (-) 381 WP_004792732.1 type II secretion system minor pseudopilin GspI Machinery gene
  OKW95_RS10530 (OKW95_10530) - 2251251..2251805 (-) 555 WP_013198081.1 type II secretion system protein -
  OKW95_RS10535 (OKW95_10535) - 2251815..2252423 (-) 609 WP_034591080.1 TetR/AcrR family transcriptional regulator -
  OKW95_RS10540 (OKW95_10540) - 2252460..2253233 (-) 774 WP_144730605.1 TatD family hydrolase -
  OKW95_RS10545 (OKW95_10545) - 2253251..2253592 (-) 342 WP_003651467.1 PilZ domain-containing protein -
  OKW95_RS10550 (OKW95_10550) - 2253603..2254583 (-) 981 WP_144730608.1 DNA polymerase III subunit delta' -
  OKW95_RS10555 (OKW95_10555) kdsB 2254597..2255358 (-) 762 WP_199944574.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13948.12 Da        Isoelectric Point: 9.4463

>NTDB_id=753382 OKW95_RS10525 WP_004792732.1 2250881..2251261(-) (xcpV) [Acinetobacter oleivorans strain S4]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=753382 OKW95_RS10525 WP_004792732.1 2250881..2251261(-) (xcpV) [Acinetobacter oleivorans strain S4]
ATGAAATCTAAAGGCTTTACTCTATTAGAGGTAATGGTAGCTTTAGCAATTTTTGCGGTAGCTGCCGTCGCATTAACTAA
AGTGGCCATGCAATATACCCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCTCAGTTTGTGGCTATGAATGAAGTTG
CCTTAATGGAGATAAATCAAGAATGGCTTCAAGGTACTCAAAGTAAGCAAGTTACTTCTCAAGGTGAAACCTGGCAGATT
GATAAATCTGCTGAATCTACAGTCAGCCCGAATGTTCAGAAAGTAGATTTGCAAATTAGCTTATATGATTCTGATAAAGG
GAAAGTTCAAAATGGTATTACCCACTTGGTATTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A372BPC4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937