Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   OKW95_RS02100 Genome accession   NZ_CP110254
Coordinates   444435..445064 (-) Length   209 a.a.
NCBI ID   WP_323739896.1    Uniprot ID   -
Organism   Acinetobacter oleivorans strain S4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 439435..450064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW95_RS02065 (OKW95_02065) mlaE 439762..440541 (+) 780 WP_005301186.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  OKW95_RS02070 (OKW95_02070) - 440541..441224 (+) 684 WP_005301188.1 outer membrane lipid asymmetry maintenance protein MlaD -
  OKW95_RS02075 (OKW95_02075) - 441251..441892 (+) 642 WP_004789665.1 phospholipid-binding protein MlaC -
  OKW95_RS02080 (OKW95_02080) - 441903..442190 (+) 288 WP_004789663.1 lipid asymmetry maintenance protein MlaB -
  OKW95_RS02085 (OKW95_02085) - 442263..443276 (-) 1014 WP_004789661.1 CorA family divalent cation transporter -
  OKW95_RS02090 (OKW95_02090) - 443435..444016 (+) 582 WP_004789659.1 TIGR00730 family Rossman fold protein -
  OKW95_RS02095 (OKW95_02095) - 444031..444429 (+) 399 WP_323739895.1 NUDIX domain-containing protein -
  OKW95_RS02100 (OKW95_02100) comF 444435..445064 (-) 630 WP_323739896.1 ComF family protein Machinery gene
  OKW95_RS02105 (OKW95_02105) recG 445057..447102 (-) 2046 WP_013196772.1 ATP-dependent DNA helicase RecG -
  OKW95_RS02110 (OKW95_02110) - 447123..447938 (+) 816 WP_323739897.1 NAD(P)H-binding protein -
  OKW95_RS02115 (OKW95_02115) - 448018..449001 (+) 984 WP_323739898.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24261.38 Da        Isoelectric Point: 8.9846

>NTDB_id=753373 OKW95_RS02100 WP_323739896.1 444435..445064(-) (comF) [Acinetobacter oleivorans strain S4]
MFSFLNPQHLIQLLSPCLLCESDVREKYSLCKDCWKQLPWLKQTIQRNDQSVLVACDYAYPVSRIIQQFKYEQKLHYEIL
LGEILQQLKFPKVQAIVPMPISNQRLIERGFNQSLLFANILSKQLKIPVWQPVQRLAEHSQKGLSRLERFENIEQQFIAL
SEEKRRYRRVLIIDDVITTGSSIYALSQALQKLGCTSIYAACLAATLTS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=753373 OKW95_RS02100 WP_323739896.1 444435..445064(-) (comF) [Acinetobacter oleivorans strain S4]
ATGTTTAGTTTCTTAAACCCACAGCATCTTATTCAATTACTCTCACCTTGCTTGTTATGTGAGTCAGATGTACGTGAAAA
ATATTCGCTCTGTAAGGACTGTTGGAAGCAGTTACCTTGGCTTAAACAAACAATTCAACGCAATGATCAATCAGTTCTTG
TGGCCTGTGATTATGCTTATCCAGTTAGCCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTATGAAATTTTG
TTAGGTGAAATTTTACAACAACTCAAATTTCCCAAGGTACAGGCTATTGTTCCTATGCCTATTTCAAATCAACGTTTAAT
CGAACGTGGTTTTAATCAGTCGTTGTTATTCGCAAATATCTTAAGCAAACAATTAAAAATACCTGTTTGGCAGCCAGTAC
AACGTCTTGCTGAACATTCGCAAAAAGGGCTTTCTCGACTTGAACGCTTTGAGAACATTGAGCAACAATTTATTGCGCTT
TCTGAAGAAAAACGGCGTTATCGCCGTGTTCTTATTATTGATGACGTAATAACCACTGGAAGCTCTATTTACGCACTCAG
TCAAGCACTTCAAAAATTAGGTTGCACATCTATCTATGCCGCTTGTTTAGCGGCAACTTTGACCAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

84.689

100

0.847
  comF Acinetobacter baumannii D1279779

83.732

100

0.837