Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QHG49_RS16480 Genome accession   NZ_CP123923
Coordinates   3802806..3803405 (-) Length   199 a.a.
NCBI ID   WP_145487065.1    Uniprot ID   -
Organism   Streptomyces sp. WP-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3797806..3808405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHG49_RS16460 (QHG49_16465) - 3798624..3799211 (-) 588 WP_145487069.1 SigE family RNA polymerase sigma factor -
  QHG49_RS16465 (QHG49_16470) - 3799615..3800670 (-) 1056 WP_159703502.1 aspartate-semialdehyde dehydrogenase -
  QHG49_RS16470 (QHG49_16475) - 3800667..3801938 (-) 1272 WP_145487067.1 aspartate kinase -
  QHG49_RS16475 (QHG49_16480) - 3802151..3802813 (-) 663 WP_301490156.1 DUF5063 domain-containing protein -
  QHG49_RS16480 (QHG49_16485) recR 3802806..3803405 (-) 600 WP_145487065.1 recombination mediator RecR Machinery gene
  QHG49_RS16485 (QHG49_16490) - 3803457..3803801 (-) 345 WP_145487064.1 YbaB/EbfC family nucleoid-associated protein -
  QHG49_RS16490 (QHG49_16495) - 3804038..3804784 (+) 747 WP_145487063.1 SLATT domain-containing protein -
  QHG49_RS16495 (QHG49_16500) - 3805216..3807087 (-) 1872 WP_301490157.1 serine/threonine-protein kinase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21760.13 Da        Isoelectric Point: 4.9909

>NTDB_id=753070 QHG49_RS16480 WP_145487065.1 3802806..3803405(-) (recR) [Streptomyces sp. WP-1]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVKRLAQALLEVKAKVRFCAACGNVAQEELCNICRDPRRDPSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLTRLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=753070 QHG49_RS16480 WP_145487065.1 3802806..3803405(-) (recR) [Streptomyces sp. WP-1]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGCTGGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCCGAGCCGACGGACGTGAAACGGCTCGCGCAGGCGCTCCTGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGGCCTGCGGCAATGTCGCGCAGGAGGAACTGTGCAACATCTGCCGTGACCCGCGCCGCGATCCCTCGGTG
ATCTGCGTCGTGGAGGAGCCGAAGGACGTCGTGGCGATCGAGCGCACCCGCGAGTTCCGCGGCCGCTACCACGTGCTCGG
CGGGGCGATCAGCCCCATCGAGGGTGTCGGGCCCGACGACCTGCGTATACGGGAACTTCTCACGCGGTTGGCCGACGGGA
CGGTCACGGAGCTGATCCTGGCCACCGATCCGAATCTCGAGGGCGAGGCGACGGCCACGTACCTCGCGCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTCACCCT
CGGCCGCGCCTTCGAGGGGAGAAGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

47.938

97.487

0.467