Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   QHG49_RS15810 Genome accession   NZ_CP123923
Coordinates   3645318..3646727 (+) Length   469 a.a.
NCBI ID   WP_145487922.1    Uniprot ID   -
Organism   Streptomyces sp. WP-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3640318..3651727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHG49_RS15795 (QHG49_15800) - 3640388..3641320 (-) 933 WP_145487919.1 Ppx/GppA phosphatase family protein -
  QHG49_RS15800 (QHG49_15805) - 3641392..3642231 (+) 840 WP_145487921.1 hypothetical protein -
  QHG49_RS15805 (QHG49_15810) - 3643278..3645119 (-) 1842 WP_370530468.1 hypothetical protein -
  QHG49_RS15810 (QHG49_15815) radA/sms 3645318..3646727 (+) 1410 WP_145487922.1 DNA repair protein RadA Machinery gene
  QHG49_RS15815 (QHG49_15820) disA 3646808..3647932 (+) 1125 WP_037660305.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  QHG49_RS15820 (QHG49_15825) - 3647960..3648790 (-) 831 WP_301490089.1 hypothetical protein -
  QHG49_RS15825 (QHG49_15830) - 3648970..3649845 (+) 876 WP_145487924.1 A/G-specific adenine glycosylase -
  QHG49_RS15830 (QHG49_15835) - 3650127..3650666 (+) 540 WP_037660309.1 SigE family RNA polymerase sigma factor -
  QHG49_RS15835 (QHG49_15840) - 3650708..3651319 (+) 612 WP_159708427.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49873.06 Da        Isoelectric Point: 7.7381

>NTDB_id=753065 QHG49_RS15810 WP_145487922.1 3645318..3646727(+) (radA/sms) [Streptomyces sp. WP-1]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVVTSALPIGQVDGRQATARTTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASEEHRTLYVTGEESASQVRLRADRINALHDELYLAAETDLSAVL
GHLDEVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKTPPGMKVLEVADMGDALRVLPRSRRREAPREPEQRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=753065 QHG49_RS15810 WP_145487922.1 3645318..3646727(+) (radA/sms) [Streptomyces sp. WP-1]
ATGGCTGCCCGTACCAAGACCACCAAGGACCGTCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGCACCACGGCCCCCGGCC
GGGTCGTCACCTCCGCGCTGCCCATCGGCCAGGTCGACGGCCGGCAGGCCACCGCCCGCACCACCGGGGTGCCCGAGCTG
GACCGGGTGCTCGGCGGGGGGCTCGTACCGGGCGCGGTGGTGCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCCACCCT
GCTGCTGGACGTGGCGGCCAAGGCGGCGAGCGAGGAGCACCGCACCCTCTATGTCACCGGCGAGGAGTCGGCGAGCCAGG
TGCGGCTGCGCGCCGACCGCATCAACGCGCTGCACGACGAGCTGTATCTGGCCGCCGAGACCGACCTCTCCGCCGTCCTC
GGGCATCTGGACGAGGTGAAGCCCTCCCTGCTGATCCTCGACTCGGTGCAGACGGTCGCCTCCCCGGAGATCGACGGCGC
GCCCGGCGGCATGGCCCAGGTCCGCGAGGTGGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGCATGTCCACGCTGC
TGGTCGGCCATGTCACCAAGGACGGCGCGATCGCGGGCCCGCGCCTGCTGGAGCACCTGGTGGACGTCGTGCTGCACTTC
GAGGGCGACCGGCACGCCCGGCTCCGCCTGGTCCGCGGCGTGAAGAACCGGTACGGCGCGACGGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGGATCACCGGTCTCGCCGACCCCAGCGGCCTCTTCCTGACCCGGCGCGACGAACCGGTGCCGG
GCACCTGTCTGACCGTGACCCTGGAGGGCCGCCGCCCGCTGGTGGCGGAGGTGCAGGCGCTGACGGTGGACTCCCAGATC
CCCTCCCCGCGGCGTACGACGTCGGGGCTGGAGACCTCCCGGGTGTCGATGATGCTGGCCGTGCTCGAACAGCGCGGCCG
GATCAGCGCGCTCGGCAAGCGGGACATCTACTCGGCGACGGTCGGCGGTGTGAAGCTGTCCGAGCCCGCCGCCGACCTGG
CCATCGCCCTCGCGCTGGCCTCCGCCGCGAGCGACACCCCGCTGCCGAAGAACCTGGTGGCCATCGGCGAGGTGGGGCTC
GCGGGCGAGGTGAGACGGGTCACGGGCGTGCAGCGCAGGCTCGCCGAGGCGCACCGGCTCGGCTTCACGCACGCGCTGGT
CCCGGGCGATCCGGGGAAGACCCCGCCGGGGATGAAGGTGCTGGAAGTCGCGGACATGGGCGACGCGCTGCGGGTGCTGC
CCCGCTCCCGTCGCCGAGAGGCCCCACGGGAGCCGGAGCAGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.805

96.375

0.422
  radA Streptococcus mitis NCTC 12261

42.984

95.736

0.412
  radA Streptococcus mitis SK321

42.984

95.736

0.412
  radA Streptococcus pneumoniae Rx1

42.762

95.736

0.409
  radA Streptococcus pneumoniae D39

42.762

95.736

0.409
  radA Streptococcus pneumoniae R6

42.762

95.736

0.409
  radA Streptococcus pneumoniae TIGR4

42.762

95.736

0.409