Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   QG728_RS10300 Genome accession   NZ_CP123854
Coordinates   2151037..2151513 (+) Length   158 a.a.
NCBI ID   WP_031380019.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain WB4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2146037..2156513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QG728_RS10290 (QG728_10290) - 2146527..2147309 (+) 783 WP_031963609.1 pilus assembly PilX N-terminal domain-containing protein -
  QG728_RS10295 (QG728_10295) - 2147325..2151023 (+) 3699 WP_280956662.1 PilC/PilY family type IV pilus protein -
  QG728_RS10300 (QG728_10300) pilY2 2151037..2151513 (+) 477 WP_031380019.1 type IV pilin protein Machinery gene
  QG728_RS10305 (QG728_10305) pilE 2151507..2151971 (+) 465 WP_032046364.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QG728_RS10310 (QG728_10310) rpsP 2152119..2152370 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  QG728_RS10315 (QG728_10315) rimM 2152390..2152938 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  QG728_RS10320 (QG728_10320) trmD 2152984..2153724 (+) 741 WP_262094040.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QG728_RS10325 (QG728_10325) rplS 2153932..2154300 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  QG728_RS10330 (QG728_10330) - 2154354..2155295 (-) 942 WP_104133477.1 triacylglycerol lipase -
  QG728_RS10335 (QG728_10335) - 2155410..2156444 (-) 1035 WP_001189451.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17393.89 Da        Isoelectric Point: 9.7307

>NTDB_id=753010 QG728_RS10300 WP_031380019.1 2151037..2151513(+) (pilY2) [Acinetobacter baumannii strain WB4]
MKRKFTYSLGFTLIEVMVVVVIVAIFAAVAIPSYQAYVLRADASRAEQEIQKISIQLNRHKSRNFNYKGFSTGAAAPVIL
PVGATGDAVKYQITIRDGDDTSKPLTDPTALGQNWVIRAEASDPYNFTYLFSSNGLRCKNKATSNVTYITCGTGAERW

Nucleotide


Download         Length: 477 bp        

>NTDB_id=753010 QG728_RS10300 WP_031380019.1 2151037..2151513(+) (pilY2) [Acinetobacter baumannii strain WB4]
ATGAAACGTAAATTCACATATTCTTTGGGCTTCACTCTTATTGAGGTAATGGTTGTGGTGGTGATTGTTGCTATTTTTGC
GGCAGTTGCAATACCTTCATATCAAGCCTATGTTTTGCGTGCGGATGCTTCGCGCGCAGAACAGGAAATCCAGAAAATTT
CCATACAGCTCAATCGTCATAAATCTAGAAATTTTAATTATAAAGGTTTTTCTACAGGTGCTGCTGCGCCAGTAATTTTG
CCTGTTGGAGCGACTGGTGATGCTGTTAAATATCAAATAACAATCCGAGATGGTGATGATACTTCGAAACCTTTAACAGA
TCCTACAGCTTTAGGGCAAAACTGGGTAATTCGAGCAGAGGCTTCCGATCCTTATAATTTTACTTATTTATTTAGTAGTA
ATGGATTACGTTGTAAAAATAAAGCCACTAGCAATGTTACTTATATAACTTGTGGCACTGGAGCTGAGCGGTGGTAA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(32-100)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

46.25

100

0.468
  comE Acinetobacter baylyi ADP1

42.424

100

0.443