Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   OFY13_RS02330 Genome accession   NZ_CP110188
Coordinates   482201..483076 (-) Length   291 a.a.
NCBI ID   WP_000418751.1    Uniprot ID   -
Organism   Vibrio cholerae strain E1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 477201..488076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFY13_RS02310 (OFY13_02310) parC 478135..480420 (+) 2286 WP_264879888.1 DNA topoisomerase IV subunit A -
  OFY13_RS02315 (OFY13_02315) yacG 480469..480666 (-) 198 WP_000162865.1 DNA gyrase inhibitor YacG -
  OFY13_RS02320 (OFY13_02320) zapD 480824..481564 (-) 741 WP_000207194.1 cell division protein ZapD -
  OFY13_RS02325 (OFY13_02325) coaE 481596..482204 (-) 609 WP_000011556.1 dephospho-CoA kinase -
  OFY13_RS02330 (OFY13_02330) pilD 482201..483076 (-) 876 WP_000418751.1 A24 family peptidase Machinery gene
  OFY13_RS02335 (OFY13_02335) pilC 483134..484360 (-) 1227 WP_000648513.1 type II secretion system F family protein Machinery gene
  OFY13_RS02340 (OFY13_02340) pilB 484403..486091 (-) 1689 WP_000957192.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OFY13_RS02345 (OFY13_02345) - 486091..486576 (-) 486 WP_000649332.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  OFY13_RS02350 (OFY13_02350) nadC 486821..487711 (-) 891 WP_000665278.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32447.72 Da        Isoelectric Point: 7.1618

>NTDB_id=752934 OFY13_RS02330 WP_000418751.1 482201..483076(-) (pilD) [Vibrio cholerae strain E1]
MELFYFYPWLFPVLATLFGLIVGSFLNVVIYRLPKIMEREWRAECAASFPEYGITPPEGKLTLSLPRSTCPHCQTPIRVI
DNIPLLSWLALRGQCSHCKAPISARYPLIELLTALMSLVIATHFPFGVFAVALLFFTYVLIAATFIDFDTLLLPDQLTLP
LLWGGIALALLGFSPVSLSDAVIGAMAGYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPVIVLLSSVVGV
IFGLIQLRQQKKGIDMAFPFGPYLAIAGWFALLWGDKVIDWYFTTWVGQPL

Nucleotide


Download         Length: 876 bp        

>NTDB_id=752934 OFY13_RS02330 WP_000418751.1 482201..483076(-) (pilD) [Vibrio cholerae strain E1]
ATGGAACTGTTTTACTTCTACCCTTGGCTGTTTCCGGTGCTCGCCACCCTGTTTGGCTTGATTGTCGGTAGCTTTCTCAA
TGTGGTGATCTACCGCTTACCCAAAATCATGGAGCGTGAATGGCGCGCGGAATGTGCGGCGAGTTTTCCTGAATATGGCA
TCACGCCACCAGAGGGTAAACTGACCCTCAGTTTGCCGCGTTCCACTTGCCCACACTGCCAAACGCCGATTCGCGTCATT
GATAATATCCCGCTACTGAGTTGGCTGGCGCTGCGCGGTCAATGCTCACACTGTAAAGCGCCGATCAGCGCTCGCTATCC
CTTGATTGAGCTACTCACTGCCCTCATGAGCTTAGTGATTGCTACTCACTTTCCGTTCGGGGTGTTTGCAGTGGCGCTGC
TGTTTTTCACCTATGTATTGATTGCGGCGACCTTCATCGACTTCGATACCCTGTTGCTGCCCGACCAATTAACGCTACCT
TTACTGTGGGGCGGTATTGCACTGGCACTGCTTGGTTTTTCTCCCGTTTCACTGAGTGATGCGGTGATCGGAGCCATGGC
GGGTTATCTCTCGCTGTGGTCGATTTACTGGCTATTTAAACTACTGACAGGTAAAGAAGGCATGGGTTATGGCGATTTCA
AATTGCTCGCCGCACTCGGCGCTTGGCTGGGTTGGCAGCAGTTGCCTGTCATCGTACTGCTCTCATCGGTGGTCGGGGTG
ATTTTCGGTTTAATCCAACTGCGCCAGCAGAAAAAAGGTATCGATATGGCCTTTCCGTTTGGCCCTTATCTCGCCATCGC
GGGGTGGTTTGCCTTGCTGTGGGGCGATAAGGTAATTGATTGGTACTTCACCACTTGGGTAGGACAACCGTTATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

99.656

100

0.997
  pilD Vibrio campbellii strain DS40M4

75.694

98.969

0.749
  pilD Acinetobacter nosocomialis M2

54.044

93.471

0.505
  pilD Acinetobacter baumannii D1279779

53.676

93.471

0.502
  pilD Neisseria gonorrhoeae MS11

45.139

98.969

0.447