Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   OFY13_RS01325 Genome accession   NZ_CP110188
Coordinates   280193..280711 (+) Length   172 a.a.
NCBI ID   WP_000792030.1    Uniprot ID   -
Organism   Vibrio cholerae strain E1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 275193..285711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFY13_RS01305 (OFY13_01305) - 275410..277887 (-) 2478 WP_000668738.1 penicillin-binding protein 1A -
  OFY13_RS01310 (OFY13_01310) pilM 278030..279046 (+) 1017 WP_000520446.1 type IV pilus assembly protein PilM Machinery gene
  OFY13_RS01315 (OFY13_01315) pilN 279036..279620 (+) 585 WP_000902745.1 PilN domain-containing protein Machinery gene
  OFY13_RS01320 (OFY13_01320) pilO 279613..280203 (+) 591 WP_000157690.1 type 4a pilus biogenesis protein PilO Machinery gene
  OFY13_RS01325 (OFY13_01325) pilP 280193..280711 (+) 519 WP_000792030.1 pilus assembly protein PilP Machinery gene
  OFY13_RS01330 (OFY13_01330) pilQ 280737..282452 (+) 1716 WP_000788427.1 type IV pilus secretin PilQ Machinery gene
  OFY13_RS01335 (OFY13_01335) aroK 282639..283163 (+) 525 WP_000818616.1 shikimate kinase AroK -
  OFY13_RS01340 (OFY13_01340) aroB 283191..284276 (+) 1086 WP_000439812.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19026.22 Da        Isoelectric Point: 10.2024

>NTDB_id=752931 OFY13_RS01325 WP_000792030.1 280193..280711(+) (pilP) [Vibrio cholerae strain E1]
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVERAARKEVTKLKPILEFEATPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=752931 OFY13_RS01325 WP_000792030.1 280193..280711(+) (pilP) [Vibrio cholerae strain E1]
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGCAGCGCGCAAAGAAGTAACTAAGCTCAAACCCATTTTAGAGTTTGAAGCCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTTGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCAGGTCAATATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

99.419

100

0.994
  pilP Vibrio campbellii strain DS40M4

56.395

100

0.564