Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   OFY13_RS01315 Genome accession   NZ_CP110188
Coordinates   279036..279620 (+) Length   194 a.a.
NCBI ID   WP_000902745.1    Uniprot ID   A0A0H6BVQ2
Organism   Vibrio cholerae strain E1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 274036..284620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFY13_RS01300 (OFY13_01300) oxyR 274442..275335 (+) 894 WP_001025909.1 DNA-binding transcriptional regulator OxyR -
  OFY13_RS01305 (OFY13_01305) - 275410..277887 (-) 2478 WP_000668738.1 penicillin-binding protein 1A -
  OFY13_RS01310 (OFY13_01310) pilM 278030..279046 (+) 1017 WP_000520446.1 type IV pilus assembly protein PilM Machinery gene
  OFY13_RS01315 (OFY13_01315) pilN 279036..279620 (+) 585 WP_000902745.1 PilN domain-containing protein Machinery gene
  OFY13_RS01320 (OFY13_01320) pilO 279613..280203 (+) 591 WP_000157690.1 type 4a pilus biogenesis protein PilO Machinery gene
  OFY13_RS01325 (OFY13_01325) pilP 280193..280711 (+) 519 WP_000792030.1 pilus assembly protein PilP Machinery gene
  OFY13_RS01330 (OFY13_01330) pilQ 280737..282452 (+) 1716 WP_000788427.1 type IV pilus secretin PilQ Machinery gene
  OFY13_RS01335 (OFY13_01335) aroK 282639..283163 (+) 525 WP_000818616.1 shikimate kinase AroK -
  OFY13_RS01340 (OFY13_01340) aroB 283191..284276 (+) 1086 WP_000439812.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21964.42 Da        Isoelectric Point: 9.9503

>NTDB_id=752929 OFY13_RS01315 WP_000902745.1 279036..279620(+) (pilN) [Vibrio cholerae strain E1]
MLHKVNLLPWRDARREAHKRRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFSLDQQIAKLKIAEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTDVEMHEIV
SGNKRFGKQFQSFKVSFQILTPASNPQAGGAHNG

Nucleotide


Download         Length: 585 bp        

>NTDB_id=752929 OFY13_RS01315 WP_000902745.1 279036..279620(+) (pilN) [Vibrio cholerae strain E1]
ATGTTGCATAAGGTCAACTTACTGCCGTGGCGTGATGCACGGCGTGAAGCACATAAGCGGCGCTTTTTGGGGTTAGTGAC
ACTCGGTGTTTTGCTGGCGGTGTTGATGCAATTTGCAGCAGGCGAATACTTGGGCGGACAAATGGCTTTGCAGCAAGAGC
GGATTGGTTATTTGCAACAACATATCTTCTCGCTGGATCAGCAGATCGCTAAGTTGAAGATCGCTGAAGAAGAACATAAG
GCGTTATTGACCCGTTTGACTGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACGACTGAGTTTATGAACCAAATGCC
CAACCTGATCCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAGATAGAAATAACCGGGATTAGCGATT
CCACCGCTCGCTTGGCAACCATGCTCGATAACTTGGAGAAGTCGGACAAATTAACCGATGTTGAAATGCATGAAATCGTT
TCAGGGAATAAGCGATTTGGTAAGCAATTTCAGAGCTTTAAAGTCTCCTTCCAAATTTTAACCCCAGCCTCTAACCCGCA
AGCGGGAGGTGCACACAATGGCTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(102-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H6BVQ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio cholerae strain A1552

100

100

1
  pilN Vibrio campbellii strain DS40M4

60.452

91.237

0.552