Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   QFA72_RS14990 Genome accession   NZ_CP123780
Coordinates   3447915..3449327 (+) Length   470 a.a.
NCBI ID   WP_065485347.1    Uniprot ID   A0ABW6EJA4
Organism   Streptomyces sp. SH5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3442915..3454327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFA72_RS14975 (QFA72_14975) - 3443796..3444746 (-) 951 WP_189520664.1 Ppx/GppA phosphatase family protein -
  QFA72_RS14980 (QFA72_14980) - 3444786..3445649 (+) 864 WP_189520663.1 hypothetical protein -
  QFA72_RS14985 (QFA72_14985) - 3445776..3447722 (-) 1947 WP_280930774.1 hypothetical protein -
  QFA72_RS14990 (QFA72_14990) radA/sms 3447915..3449327 (+) 1413 WP_065485347.1 DNA repair protein RadA Machinery gene
  QFA72_RS14995 (QFA72_14995) disA 3449408..3450532 (+) 1125 WP_189520661.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  QFA72_RS15000 (QFA72_15000) - 3450891..3451640 (-) 750 WP_280930775.1 hypothetical protein -
  QFA72_RS15005 (QFA72_15005) - 3451946..3452860 (+) 915 WP_280930776.1 A/G-specific adenine glycosylase -
  QFA72_RS15010 (QFA72_15010) - 3453030..3453692 (+) 663 WP_280930778.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49508.61 Da        Isoelectric Point: 8.0042

>NTDB_id=752667 QFA72_RS14990 WP_065485347.1 3447915..3449327(+) (radA/sms) [Streptomyces sp. SH5]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRTATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESASQVRLRADRIKAINDHLYLAAETDLSAV
LAHLDEVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDVAVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGRVPAGMKVTEVADMGDALRVLPRRSRQEAPQEDNARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=752667 QFA72_RS14990 WP_065485347.1 3447915..3449327(+) (radA/sms) [Streptomyces sp. SH5]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGTCCGTCCTACCGCTGCACCGAATGCGGCTGGACGACCGCCAAATGGCT
CGGCCGTTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTGCGCACGACGGCGGCGG
GCCGGGTCTCCACCGCCGCCCTGCCGATCGGCCAGGTCGACAGCCGGACGGCCACGGCCCGTTCCACCGGTGTCGGCGAG
CTGGACCGGGTGCTGGGTGGCGGGCTCGTGCCGGGCGCGGTCGTGCTGCTGGCGGGCGAGCCGGGGGTCGGCAAGTCGAC
GCTGCTGCTGGACGTGGCGGCCAAGGCGGCGAGCGACGACCACCGCACGCTCTATGTGACGGCCGAGGAGTCCGCGAGCC
AGGTCCGGCTGCGGGCCGACCGGATCAAGGCGATCAACGACCACCTCTACCTCGCCGCGGAGACCGATCTGTCGGCGGTG
CTCGCGCATCTGGACGAGGTCAAGCCGTCGCTGCTGATCCTGGACTCGGTGCAGACGGTCGCCTCGCCCGAGATCGACGG
CGCGCCCGGCGGGATGGCCCAGGTCCGGGAGGTCGCCGGGGCGCTGATCCGGGCGTCCAAGGAGCGCGGGATGGCCACGC
TGCTGGTCGGCCATGTGACGAAGGACGGCGCGATCGCGGGGCCCCGGCTGCTGGAGCACCTGGTGGACGTGGTGCTGTCC
TTCGAGGGCGACCGGCACGCCCGGCTGCGGCTGGTGCGCGGCGTCAAGAACCGTTACGGGGCGACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCGTCGGGCCTCTTCCTGACCCGCCGCGACGTGGCCGTGC
CGGGCACCTGTCTGACGGTGACGCTGGAGGGCAAGCGGCCGCTGGTCGCCGAGGTGCAGGCGCTCACCGTCGACTCGCAG
ATCCCCTCGCCCCGGCGCACGACCTCGGGTCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTGCTGGAGCAGCGGGG
CCGGATCAGCGCGCTCGGCAAGCGGGACATCTACAGCGCGACGGTGGGCGGCGTGAAGCTCACCGAGCCCGCCGCGGACC
TGGCGGTCGCGCTCGCGCTGGCCAGCGCGGCCAGCGACACCCCGCTCCCGAAGAACCTGGTCGCGATCGGCGAGGTGGGG
CTCGCGGGCGAGGTCAGAAGGGTCACCGGGGTGCAGAGGAGACTGGCCGAGGCACACCGTCTGGGCTTCACCCACGCCCT
CGTGCCGACCGATCCGGGGCGGGTCCCGGCCGGTATGAAGGTCACGGAAGTCGCCGACATGGGCGACGCTCTGCGGGTCC
TCCCGCGCCGCTCTCGCCAGGAGGCACCACAGGAGGACAACGCGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(85-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.709

96.383

0.421
  radA Streptococcus pneumoniae Rx1

44.755

91.277

0.409
  radA Streptococcus pneumoniae D39

44.755

91.277

0.409
  radA Streptococcus pneumoniae R6

44.755

91.277

0.409
  radA Streptococcus pneumoniae TIGR4

44.755

91.277

0.409
  radA Streptococcus mitis SK321

44.755

91.277

0.409
  radA Streptococcus mitis NCTC 12261

44.522

91.277

0.406