Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   NOV96_RS09445 Genome accession   NZ_CP110141
Coordinates   1923705..1924418 (-) Length   237 a.a.
NCBI ID   WP_012774930.1    Uniprot ID   A0A142UPI2
Organism   Streptococcus suis strain WUSS030     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1919061..1928873 1923705..1924418 within 0
IS/Tn 1924642..1925931 1923705..1924418 flank 224


Gene organization within MGE regions


Location: 1919061..1928873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOV96_RS09420 (NOV96_09420) - 1919061..1919360 (-) 300 WP_240016658.1 hypothetical protein -
  NOV96_RS09425 (NOV96_09425) - 1919364..1919741 (-) 378 WP_002935940.1 DUF1310 family protein -
  NOV96_RS09430 (NOV96_09430) - 1919907..1922240 (-) 2334 WP_002935942.1 endonuclease MutS2 -
  NOV96_RS09435 (NOV96_09435) - 1922791..1923339 (-) 549 WP_002935945.1 CvpA family protein -
  NOV96_RS09440 (NOV96_09440) - 1923336..1923647 (-) 312 WP_002935948.1 hypothetical protein -
  NOV96_RS09445 (NOV96_09445) treR 1923705..1924418 (-) 714 WP_012774930.1 trehalose operon repressor Regulator
  NOV96_RS09450 (NOV96_09450) - 1924642..1925931 (-) 1290 WP_002935134.1 IS4-like element ISSsu2 family transposase -
  NOV96_RS11015 - 1926393..1926536 (+) 144 WP_353890957.1 hypothetical protein -
  NOV96_RS09455 (NOV96_09455) - 1926531..1928873 (-) 2343 WP_002935132.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27200.07 Da        Isoelectric Point: 6.7422

>NTDB_id=752668 NOV96_RS09445 WP_012774930.1 1923705..1924418(-) (treR) [Streptococcus suis strain WUSS030]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=752668 NOV96_RS09445 WP_012774930.1 1923705..1924418(-) (treR) [Streptococcus suis strain WUSS030]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTAACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCAATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAACAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142UPI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515