Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   QFA72_RS09675 Genome accession   NZ_CP123780
Coordinates   2210652..2211743 (-) Length   363 a.a.
NCBI ID   WP_280929624.1    Uniprot ID   A0ABW6EJG8
Organism   Streptomyces sp. SH5     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2205652..2216743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFA72_RS09665 (QFA72_09665) rcrP 2206975..2208708 (+) 1734 WP_280929622.1 ABC transporter ATP-binding protein Regulator
  QFA72_RS09670 (QFA72_09670) - 2208708..2210636 (+) 1929 WP_189527568.1 ABC transporter ATP-binding protein -
  QFA72_RS09675 (QFA72_09675) rpoS 2210652..2211743 (-) 1092 WP_280929624.1 RNA polymerase sigma factor Regulator
  QFA72_RS09680 (QFA72_09680) dnaG 2211949..2213871 (-) 1923 WP_280929626.1 DNA primase -
  QFA72_RS09685 (QFA72_09685) - 2213966..2215225 (-) 1260 WP_189527494.1 FAD-dependent oxidoreductase -
  QFA72_RS09690 (QFA72_09690) - 2215364..2216713 (-) 1350 WP_280929628.1 deoxyguanosinetriphosphate triphosphohydrolase -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 40574.29 Da        Isoelectric Point: 6.4131

>NTDB_id=752656 QFA72_RS09675 WP_280929624.1 2210652..2211743(-) (rpoS) [Streptomyces sp. SH5]
MQTRTVTTTTAPMAAIPAQNRALRHPETAAGPPGHAPEAVMVEATHLPEPPDPRNRADTGGPTSDLFRQYLREIGRIPLL
TAAEEVELARRVEAGLFAEERLAGTPDLDSRLAGDLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGN
LGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGVEPTAEDIAVELDL
TPERVTEVLRLAQEPVSLHAPVGEEDDVSFGDLIEDGDAASPVESAAFLLLRQHLEAVLSTLGERERKVVQLRYGLDDGR
PRTLEEIGRIFGVTRERIRQIESKTLSRLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=752656 QFA72_RS09675 WP_280929624.1 2210652..2211743(-) (rpoS) [Streptomyces sp. SH5]
GTGCAGACCCGGACCGTGACGACCACGACCGCGCCCATGGCGGCCATCCCCGCGCAGAACAGGGCCCTGCGCCACCCGGA
GACCGCAGCCGGCCCGCCCGGACACGCACCCGAGGCAGTCATGGTGGAAGCGACGCACCTCCCCGAACCCCCGGACCCCA
GGAACCGGGCGGACACCGGTGGCCCCACCTCCGACCTGTTCCGGCAGTATCTGCGCGAGATCGGCCGCATCCCGCTGCTC
ACCGCCGCCGAGGAGGTCGAGCTGGCCCGCCGCGTCGAGGCCGGACTCTTCGCGGAGGAGCGGCTCGCGGGCACCCCGGA
CCTGGACTCCCGGCTCGCGGGCGACCTGGACCGGCTCGTCGTCATGGGCCGCACCGCCAAACGCCGCCTCATCGAGGCAA
ACCTCCGCCTCGTCGTCTCCGTCGCCAAGCGGTATGTGGGCCGCGGGCTGACCATGCTCGACCTGGTCCAGGAGGGCAAT
CTCGGCCTGATCCGGGCCGTGGAGAAGTTCGACTACGCCCGGGGCTACAAGTTCTCCACGTACGCCACCTGGTGGATCCG
CCAGGCCATGTCCCGCGCCCTCGCCGACCAGGCCCGCACCATCCGCGTCCCCGTCCACGTCGTGGAGCTGATCAACCGCG
TGGTGCGCGTCCAGCGCCGCCTCCTCCAGGAGCGCGGCGTCGAGCCGACCGCCGAGGACATCGCCGTCGAACTGGACCTG
ACCCCCGAGCGGGTCACCGAAGTCCTCCGCCTGGCCCAGGAACCGGTCTCCCTGCACGCCCCCGTCGGCGAGGAGGACGA
CGTCTCCTTCGGCGACCTCATCGAGGACGGCGACGCCGCCTCACCCGTCGAGTCCGCCGCCTTCCTGCTGCTGCGCCAGC
ACCTGGAGGCGGTGCTCTCCACCCTCGGCGAACGCGAACGCAAGGTCGTGCAACTGCGCTACGGCCTGGACGACGGGCGG
CCCCGCACCCTGGAGGAGATAGGACGCATCTTCGGCGTGACACGCGAACGTATCCGCCAGATCGAGTCCAAGACCCTCAG
CAGGCTGCGGGACCACGCCTTCGCCGACCAACTCCGCGGCTACCTCGACTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(65-98)

Sigma-70, region 4 (Sigma70_r4)

(298-350)

Sigma-70 region 3 (Sigma70_r3)

(209-285)

Sigma-70 region 2 (Sigma70_r2)

(130-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.787

95.592

0.399