Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   QFA72_RS09665 Genome accession   NZ_CP123780
Coordinates   2206975..2208708 (+) Length   577 a.a.
NCBI ID   WP_280929622.1    Uniprot ID   -
Organism   Streptomyces sp. SH5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2201975..2213708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFA72_RS09630 (QFA72_09630) - 2202390..2202797 (-) 408 WP_189527825.1 PIN domain nuclease -
  QFA72_RS09635 (QFA72_09635) - 2202794..2203027 (-) 234 WP_118905198.1 type II toxin-antitoxin system VapB family antitoxin -
  QFA72_RS09655 (QFA72_09655) - 2204822..2205127 (+) 306 WP_003969335.1 hypothetical protein -
  QFA72_RS09660 (QFA72_09660) - 2205372..2206823 (+) 1452 WP_189527490.1 FGGY family carbohydrate kinase -
  QFA72_RS09665 (QFA72_09665) rcrP 2206975..2208708 (+) 1734 WP_280929622.1 ABC transporter ATP-binding protein Regulator
  QFA72_RS09670 (QFA72_09670) - 2208708..2210636 (+) 1929 WP_189527568.1 ABC transporter ATP-binding protein -
  QFA72_RS09675 (QFA72_09675) rpoS 2210652..2211743 (-) 1092 WP_280929624.1 RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62215.34 Da        Isoelectric Point: 5.3777

>NTDB_id=752655 QFA72_RS09665 WP_280929622.1 2206975..2208708(+) (rcrP) [Streptomyces sp. SH5]
MLIKLLRAHLGPYKKPIVLLVLLQLLQTCATLYLPSLNADIIDNGVVTGDTGYILEFGGLMIAVSVLQVLCNVGAVFYGA
RTASTLGRDVRAAVFDRVQSFSARELGRFGAPSLITRTTNDVQQVQMLVLLAFTLMVSAPIMCVGGIIMALGLDVPLSAV
LLAVVPVLGVSVGLIVRKMGPLFRTMQERLDGVNRVLREQITGNRVIRAFVRDGYEEKRFRGANTELTDVSVATGRLMAL
MFPTVMTVVNLSSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLGTASSVVP
PVAPVLELGRHGHLEVRGAEFRYPGAEEPVLRNVDLVARPGETTAVIGSTGSGKSTLLGLVSRLFDVTDGEVLVDGEDVR
TLDPALLARTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEALEHGLDAPIAQGGTNVSGGQRQRL
AIARTLVRRPEIYLFDDSFSALDYATDAALRAALGRETAGATVVIVAQRVSTIRDADRILVLDEGRLVGTGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=752655 QFA72_RS09665 WP_280929622.1 2206975..2208708(+) (rcrP) [Streptomyces sp. SH5]
GTGCTCATAAAACTCCTGCGGGCCCATCTGGGCCCGTACAAGAAACCCATCGTGCTGCTGGTCCTCCTCCAGCTGCTCCA
GACCTGCGCCACCCTGTATCTGCCCAGCCTGAACGCCGACATCATTGACAACGGTGTCGTCACGGGTGACACCGGATACA
TCCTGGAGTTCGGCGGTCTCATGATCGCCGTCAGCGTTCTCCAGGTGCTCTGCAATGTGGGAGCCGTCTTCTACGGGGCC
CGTACCGCCTCCACCCTCGGGCGGGATGTGCGGGCCGCCGTCTTCGACCGGGTGCAGTCCTTCTCGGCCCGGGAGCTGGG
GCGCTTCGGGGCGCCCTCGCTGATCACCCGGACCACCAACGACGTCCAGCAGGTCCAGATGCTGGTGCTGCTGGCGTTCA
CGCTGATGGTGTCGGCCCCGATCATGTGCGTCGGCGGGATCATCATGGCGCTCGGCCTGGATGTGCCGCTCTCCGCGGTG
CTGCTGGCGGTCGTGCCGGTGCTCGGGGTCTCGGTCGGGCTCATCGTGCGGAAGATGGGGCCGCTGTTCCGCACCATGCA
GGAGCGGCTGGACGGGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGGGCGTTCGTCCGGGACG
GGTACGAGGAGAAGCGCTTCCGGGGCGCGAACACCGAGCTGACCGATGTGTCGGTGGCGACCGGGCGGCTGATGGCGCTG
ATGTTCCCGACCGTCATGACGGTGGTGAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGTGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCGAGGAGGTCCTCGGGACCGCATCGAGTGTCGTGCCG
CCCGTCGCCCCGGTCCTGGAATTGGGCCGGCACGGGCATCTGGAGGTGCGGGGCGCGGAGTTCCGGTATCCGGGGGCGGA
GGAGCCGGTGCTGCGGAACGTCGACCTGGTGGCCCGGCCCGGGGAGACCACCGCGGTCATCGGGTCCACCGGCAGCGGGA
AGTCCACGCTGCTCGGGCTCGTGTCCCGGCTGTTCGATGTGACGGACGGCGAGGTGCTGGTCGACGGCGAGGACGTGCGG
ACGCTGGATCCGGCGCTGCTGGCGAGGACGGTGTCCCTGGTGCCGCAGAAGCCGTACCTCTTCTCGGGGACGGTGGCGAC
GAACCTGCGGTACGGGAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGAGTTCG
TCGAGGCGCTGGAGCACGGGCTCGACGCGCCGATCGCGCAGGGCGGCACCAATGTGTCCGGCGGTCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCGGCGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACCGA
CGCCGCGCTGCGGGCGGCGCTGGGCCGGGAGACGGCCGGGGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCCTGGTGCTGGACGAGGGCCGGCTCGTGGGCACCGGCACCCATCACGAGCTGATGGACGGCAAT
GAAACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.623

100

0.4